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56 Open 59 Closed
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Issues list

Error: can't undefined value as an ARRAY reference at detect_cnv.pl
#121 opened Jun 13, 2024 by SamGreen52
1
compile_pfb.pl running time issue
#120 opened Jun 6, 2024 by zuyan413
3
Inquiry Regarding Suitability of PennCNV for CNV Detection with Low-Resolution Array Data
#118 opened Mar 27, 2024 by jeff665547
1
Compilation issues
#117 opened Mar 5, 2024 by MrDotOne
4
Could the number of SNP probes be more than the length of the called CNV (bp)? Image attached
#115 opened Feb 9, 2024 by prans-neuro
How do we get the imm_regions file?
#113 opened Dec 7, 2023 by prans-neuro
1
Processing the same coordinates on Illumina OmniExpressExomeBeadChip
#112 opened Oct 17, 2023 by aburayaki
PennCNV-Affy substep 1.3 cluster generation for chrX when all samples are female?
#110 opened Jun 28, 2023 by Lydia-King
detect_cnv.pl -test vs detect_cnv.pl -validate
#109 opened Jun 23, 2023 by rodrigopsav
Error: input to reg_linear() should be two reference to arrays
#108 opened Jun 19, 2023 by sahwa
Output file sometimes huge, sometimes small, regardless of number of samples???
#107 opened Jun 16, 2023 by Jolleboll
Two questions: 1) filter first or merge first, 2) B allele freq figure for duplication CNVs
#106 opened Apr 5, 2023 by xiaoqing-liu
2
generate_affy_geno_cluster.pl no SNP or CN markers
#105 opened Apr 3, 2023 by sophie-03
PennCNV compilation error
#104 opened Mar 20, 2023 by anvarodi
Confidence score calculation
#103 opened Mar 8, 2023 by sherrybio
1
HMM and PFB files of Brassica napus 60K Illumina InfiniumT SNP array
#102 opened Feb 22, 2023 by zhenling0628
Generating signal intensity for axiom arrays
#100 opened Feb 2, 2023 by sophie-03
1
Trio-based CNV detection error: no snpdist defined!!!
#99 opened Jan 11, 2023 by hezht3
non-European populations GC-waves models and ASA chip
#97 opened Oct 28, 2022 by Captain-Pam
11
PFB and Intensities file number of probes (rows) mismatch
#94 opened Oct 19, 2022 by dvirsegal
2
Signal values for 0 CNV region
#93 opened Oct 18, 2022 by psychrb
4
compile_pfb.pl issue
#90 opened Aug 26, 2022 by sophie-03
4
visualize_cnv.pl
#89 opened Aug 19, 2022 by psychrb
5
genomic_wave.pl sub trainGCModel subsets lrr values differently to method described in paper
#88 opened Aug 8, 2022 by joshuamschmidt
1
Documentation links to two different docker images
#87 opened Jun 5, 2022 by DanielEWeeks
1
ProTip! Follow long discussions with comments:>50.