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Processing the same coordinates on Illumina OmniExpressExomeBeadChip #112

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aburayaki opened this issue Oct 17, 2023 · 0 comments

aburayaki commented Oct 17, 2023 •

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I am trying to detect CNVs using SNP arrays obtained with the Illumina OmniExpressExomeBeadChip.

In doing so, there are multiple probes with the same coordinates on the Illumina OmniExpressExomeBeadChip, should I perform any processing on them?

If removing duplicates or other processing would lead to more accurate CNV calling, I would be interested to know how to do.

It would be great if you could you could tell me.

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