spatialtopology · Michael-Sun · Jul 18, 2023 · Jul 18, 2023 · Aug 5, 2023 · Aug 7, 2023
diff --git a/.all-contributorsrc b/.all-contributorsrc
diff --git a/.codespellrc b/.codespellrc
diff --git a/.github/ISSUE_TEMPLATE/🐞-bug-report.md b/.github/ISSUE_TEMPLATE/🐞-bug-report.md
diff --git a/.github/ISSUE_TEMPLATE/💎-feature-request.md b/.github/ISSUE_TEMPLATE/💎-feature-request.md
diff --git a/.github/ISSUE_TEMPLATE/📚-documentation-request.md b/.github/ISSUE_TEMPLATE/📚-documentation-request.md
diff --git a/.github/ISSUE_TEMPLATE/🧠-duplicate-scans-fmap.md b/.github/ISSUE_TEMPLATE/🧠-duplicate-scans-fmap.md
diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml
diff --git a/.gitignore b/.gitignore
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
diff --git a/.vscode/settings.json b/.vscode/settings.json
diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md
diff --git a/LICENSE.md b/LICENSE.md
diff --git a/README.md b/README.md
diff --git a/dist/spacetop_prep-0.1.dev0.tar.gz b/dist/spacetop_prep-0.1.dev0.tar.gz
diff --git a/pyproject.toml b/pyproject.toml
diff --git a/setup.py b/setup.py
diff --git a/spacetop_prep.egg-info/PKG-INFO b/spacetop_prep.egg-info/PKG-INFO
@@ -0,0 +1,52 @@
+Metadata-Version: 2.1
+Name: spacetop-prep
+Version: 0.1.dev0
+Summary: shablona: a template for small scientific Python projects
+Home-page: http://github.com/spatialtopology/spacetop_prep
+Download-URL: 
+Author: Heejung Jung
+Author-email: [email protected]
+Maintainer: Heejung Jung
+Maintainer-email: [email protected]
+License: MIT
+Platform: OS Independent
+Classifier: Development Status :: 3 - Alpha
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python
+Classifier: Topic :: Scientific/Engineering
+Requires: numpy
+Requires-Python: >= 3.7
+Provides-Extra: physio
+License-File: LICENSE.md
+
+
+
+ TODO replace with description for you
+
+Shablona
+========
+Shablona is a template project for small scientific Python projects.
+
+It contains software implementations of an analysis of some simple data, but
+more importantly, it contains infrastructure for testing, documentation,
+continuous integration and deployment, which can be easily adapted
+to use in other projects.
+
+To get started using these components in your own software, please go to the
+repository README_.
+
+.. _README: https://github.com/uwescience/shablona/blob/master/README.md
+
+License
+=======
+``shablona`` is licensed under the terms of the MIT license. See the file
+"LICENSE" for information on the history of this software, terms & conditions
+for usage, and a DISCLAIMER OF ALL WARRANTIES.
+
+All trademarks referenced herein are property of their respective holders.
+
+Copyright (c) 2015--, Ariel Rokem, The University of Washington
+eScience Institute.
diff --git a/spacetop_prep.egg-info/SOURCES.txt b/spacetop_prep.egg-info/SOURCES.txt
@@ -0,0 +1,49 @@
+LICENSE.md
+README.md
+pyproject.toml
+setup.py
+spacetop_prep/__init__.py
+spacetop_prep/version.py
+spacetop_prep.egg-info/PKG-INFO
+spacetop_prep.egg-info/SOURCES.txt
+spacetop_prep.egg-info/dependency_links.txt
+spacetop_prep.egg-info/requires.txt
+spacetop_prep.egg-info/top_level.txt
+spacetop_prep/physio/__init__.py
+spacetop_prep/physio/c01_bidsifysort.py
+spacetop_prep/physio/c02_save_separate_run.py
+spacetop_prep/physio/p01_grouplevel_01SCL.py
+spacetop_prep/physio/p01_grouplevel_02SCR.py
+spacetop_prep/physio/archive/__init__.py
+spacetop_prep/physio/archive/_binarize_channel.py
+spacetop_prep/physio/archive/_extract_runs.py
+spacetop_prep/physio/archive/_identify_boundary.py
+spacetop_prep/physio/archive/c02_save_separate_run_WASABI.py
+spacetop_prep/physio/archive/p01_group_level_analysis.py
+spacetop_prep/physio/archive/p01_group_level_analysis_nonspaghetti.py
+spacetop_prep/physio/archive/p01_group_level_analysis_rawSCL.py
+spacetop_prep/physio/archive/p01_group_level_analysis_saveonset.py
+spacetop_prep/physio/archive/p01_grouplevel.py
+spacetop_prep/physio/archive/s02_extract_acq/__init__.py
+spacetop_prep/physio/archive/s02_extract_acq/c01_extract_onset_TEST.py
+spacetop_prep/physio/archive/s02_extract_acq/c01_extract_ttl_discovery.py
+spacetop_prep/physio/archive/s02_extract_acq/c01_extract_ttl_onsets.py
+spacetop_prep/physio/archive/s02_extract_acq/c02_plot_ttl_onsets.py
+spacetop_prep/physio/archive/test/__init__.py
+spacetop_prep/physio/archive/test/c01_identify_run_and_save.py
+spacetop_prep/physio/archive/test/c02_identify_event_transition.py
+spacetop_prep/physio/archive/test/c03_identify_ttl.py
+spacetop_prep/physio/utils/__init__.py
+spacetop_prep/physio/utils/checkfiles.py
+spacetop_prep/physio/utils/initialize.py
+spacetop_prep/physio/utils/preprocess.py
+spacetop_prep/physio/utils/qcplots.py
+spacetop_prep/physio/utils/ttl_extraction.py
+spacetop_prep/physio/utils/tests/__init__.py
+spacetop_prep/physio/utils/tests/test_initialize.py
+spacetop_prep/qcplot/__init__.py
+spacetop_prep/qcplot/bokeh_step01.py
+spacetop_prep/redcap/__init__.py
+spacetop_prep/redcap/r01_convert_redcap_pandas.py
+spacetop_prep/redcap/r01_convert_redcap_pandas_allconsent.py
+spacetop_prep/redcap/r01_convert_redcap_pandas_fourses.py
diff --git a/spacetop_prep.egg-info/dependency_links.txt b/spacetop_prep.egg-info/dependency_links.txt
@@ -0,0 +1 @@
+
diff --git a/spacetop_prep.egg-info/requires.txt b/spacetop_prep.egg-info/requires.txt
@@ -0,0 +1,6 @@
+numpy
+
+[physio]
+matplotlib
+neurokit2
+bioread
diff --git a/spacetop_prep.egg-info/top_level.txt b/spacetop_prep.egg-info/top_level.txt
@@ -0,0 +1 @@
+spacetop_prep
diff --git a/spacetop_prep/__init__.py b/spacetop_prep/__init__.py
diff --git a/spacetop_prep/beh/copy_behavioral_data_over.py b/spacetop_prep/beh/copy_behavioral_data_over.py
diff --git a/spacetop_prep/datalad/BIDS_validate.sh b/spacetop_prep/datalad/BIDS_validate.sh
diff --git a/spacetop_prep/datalad/SUBMIT_datalad.sh b/spacetop_prep/datalad/SUBMIT_datalad.sh
diff --git a/spacetop_prep/datalad/log/datalad_24163_10.e b/spacetop_prep/datalad/log/datalad_24163_10.e
diff --git a/spacetop_prep/datalad/log/datalad_24163_10.o b/spacetop_prep/datalad/log/datalad_24163_10.o
diff --git a/spacetop_prep/datalad/log/datalad_24163_4.o b/spacetop_prep/datalad/log/datalad_24163_4.o
diff --git a/spacetop_prep/datalad/log/datalad_24163_5.e b/spacetop_prep/datalad/log/datalad_24163_5.e