Explore our multimodal fMRI dataset, comprised of naturalistic data with diverse experimental tasks.
task-{repo}: The six fMRI task codes used on our "Stimulus PC".- Explore READMEs for task insights.
- Utilize our code and cite us!
d_beh: Contains scan-related behavioral data in BIDS format, pushed directly from "Stimulus PC".spacetop-prep: Preprocessing scripts for behavioral and fMRI data.- Installable as a standalone Python package.
- Contribute your preprocessing or quality control tools via pull requests.
@tor requested a list of links and paths for data management purposes. This is an extensive list and will continue to grow. Therefore, the following links will be maintained in a google docs, in conjunction to this slack message.
For external users: checkout details from headers marked with "🚀".
For internal CANlab spacetop team members, request access if you are part of the active IRB.
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Code- alignvideo: https://github.com/spatialtopology/alignvideos/releases/tag/v1.0.0-stable
- faces: https://github.com/spatialtopology/faces/releases
- fractional: https://github.com/spatialtopology/fractional_factorials/releases/tag/v.1.0.0
- narratives: https://github.com/spatialtopology/Narratives/releases/tag/v.1.0.0
- shortvideos: https://github.com/spatialtopology/shortvideos/releases/tag/v1.0.0-stable
- social: https://github.com/spatialtopology/social_influence/releases/tag/v1.0.0-stable
- Behavioral: https://github.com/spatialtopology/d_beh
- Demographic data: https://redcap.dartmouth.edu
2. Scan notes metadata google sheets link
- #spacetop_recruitment
- #spatialtopology (private channel)
- #spacetop_qc
4. Google Drive link
- updated 05/15/2023 migration from CU
- updated 05/23/2024 migration from individual google drive to Shared Google drive (link)
- NOTE: only members who are part of the active IRB are granted access
- Confluence (Deprecated) https://spacetop.atlassian.net/wiki//
- github.io spatialtopology.github.io
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DATA- path:
/dartfs-hpc/rc/lab/C/CANlab/labdata/data/spacetop_data - fMRI data
- DICOM:
/dartfs-hpc/rc/lab/C/CANlab/labdata/data/spacetop/dartmouth/sourcedata - BIDS (source data):
/dartfs-hpc/rc/lab/C/CANlab/labdata/data/spacetop/dartmouth - Fmriprep-processed:
/dartfs-hpc/rc/lab/C/CANlab/labdata/data/spacetop_data/derivatives/fmriprep/results/fmriprep - Behavioral
- Raw behavioral data: https://github.com/spatialtopology/d_beh
- Cleaned behavioral data
- Physio data @isabeln23
- Raw Physio:
/dartfs-hpc/rc/lab/C/CANlab/labdata/data/spacetop/biopac/dartmouth/rawdata - Redcap questionnaire data
- Raw questionnaire (deidentified)
- Cleaned behavioral data [add link]
PROJECTS
task-social:/dartfs-hpc/rc/lab/C/CANlab/labdata/projects/spacetop_projects_cuetask-narratives:/dartfs-hpc/rc/lab/C/CANlab/labdata/projects/spacetop_projects_narratives