Skip to content

Issues: shendurelab/LACHESIS

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

45 Open 16 Closed
45 Open 16 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

ERROR: Couldn't find any ordering files ('group*.ordering') in out/test_case/main_results/. Is this the right directory? Was Lachesis successfully run?
#69 opened Jul 4, 2023 by Eric-anyu
checking for sam_open in -lbam... no
#68 opened May 19, 2022 by fire-activate
compile fail int64_t declaration without type.
#67 opened Jun 14, 2021 by molikd
1
samtools error
#66 opened Apr 6, 2021 by anupullanhi
1
Lachesis: GenomeLinkMatrix.cc:1133: void GenomeLinkMatrix::ValidateClusters(const TrueMapping*, bool) const: Assertion `( same_cluster ? N_links_same_cluster : N_links_diff_cluster )
#65 opened Mar 17, 2021 by pengbo233
1
void LoadDeNovoCLMsFromSAM
#64 opened Nov 27, 2020 by linshengnan2020
Error in force(filename) : object 'jpeg.file' not found
#63 opened Sep 29, 2020 by baishengjun
Error for ordering step
#62 opened Dec 17, 2019 by clementmo
cluster number is not equal with what I know
#60 opened Sep 4, 2019 by forrwill
configuration ERROR with samtools
#59 opened Aug 1, 2019 by WTarabidopsis
3
samtools-0.1.18 boost_1_52_0
#58 opened Apr 17, 2019 by liyang16859
1
checking for library containing deflate... no
#57 opened Mar 20, 2019 by sr-c
1
errors about SAMStepper.cc and SAMStepper.h in sam.h
#56 opened Mar 13, 2019 by GitHub-Lujianjun
bam/sam.h
#54 opened Jan 11, 2019 by simonkidd
7
How to get chromosome bins
#53 opened Dec 17, 2018 by mictadlo
6
error: Assertion `c1.pos == c2.mpos' failed
#51 opened Nov 4, 2018 by hzaumsq
4
Bareword found where operator expected at PreprocessSAMs.pl
#48 opened Aug 6, 2018 by mictadlo
1
CreateScaffoldedFasta.pl error
#46 opened Apr 25, 2018 by bhagya-ct
2
An configure error about boost
#44 opened Mar 25, 2018 by wangzhennan14
3
Boost lib connect error? any one have solve it?
#43 opened Mar 23, 2018 by milkcookie
Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed.
#42 opened Dec 22, 2017 by rahmanYI
3
LIBEVENT_CHECK_CONFIG
#39 opened Oct 1, 2017 by jayshankarcnair
1
No link data
#38 opened Sep 29, 2017 by SergejN
2
when donging 'make', it appeared 'collect2: ld returned 1 exit status'
#37 opened Jun 23, 2017 by maolingfengZJU
5
Incorrect Reverse Complementation
#36 opened Apr 18, 2017 by malonge
ProTip! Find all open issues with in progress development work with linked:pr.