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samtools error #66

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anupullanhi opened this issue Apr 6, 2021 · 1 comment
Open

samtools error #66

anupullanhi opened this issue Apr 6, 2021 · 1 comment

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@anupullanhi
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Hi, I got the same error for samtools while running configure as shown below:

Command used - ./configure --with-samtools=./src/include/samtools-legacy_0.1.19_debian

Error:
checking for sam_open in -lbam... no
checking samtools... failed
configure: error: either specify a valid samtools installation with --with-samtools=DIR or disable samtools usage with --without-samtools

I tried the export commands as well but it didn't work.
Any help in resolving this issue is appreciated.

Thank you

@yeeus
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yeeus commented Apr 11, 2023

Do you solve this problem?
Best wishes for your help.

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