Scheme creation

.travis.yml

@@ -20,20 +20,13 @@ branches:
   only:
     - master
     - development
-
-# Blacklist of branches to not run CI testing on.
-# branches:
-#  except:
-#   - dontrunme 
-#   - test 
+    - /^.+\/_base$/
 
 before_install:
   - sudo apt-get -qq update;
 
 install:
   - python setup.py install
-  #Install pytest for testing.
-  - pip install pytest
 
 script:
-  - pytest
+  - python setup.py test

MANIFEST.in

@@ -2,6 +2,8 @@ include LICENSE
 include README.rst
 include MANIFEST.in
 include setup.py
-recursive-include *.py *.fasta
+recursive-include biohansel/subtype/data *.fasta
 exclude ipynbs
-exclude venv
+exclude venv
+exclude .venv
+global-exclude *.py[co] __pycache__

README.rst

@@ -268,7 +268,7 @@ Get the latest development code using Git from GitHub:
     pip install -e .
 
 
-Run tests with pytest_:
+Run tests with `$ python setup.py test` or pytest_:
 
 .. code-block:: bash
 
@@ -280,7 +280,6 @@ Run tests with pytest_:
     pytest -s tests/test_qc.py
 
 
-
 Legal
 =====