Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Scheme creation #52

Open
wants to merge 15 commits into
base: development
Choose a base branch
from
Open

Scheme creation #52

wants to merge 15 commits into from

Commits on Jul 13, 2018

  1. argparse -> click; bio_hansel -> biohansel; creating base for `biohan… 

    …sel create`

Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Jul 13, 2018
    Configuration menu
    Copy the full SHA
    ab6bf7f View commit details
    Browse the repository at this point in the history

Commits on Jul 16, 2018

  1. add create subcommand; restructure/refactor for different subcommands 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Jul 16, 2018
    Configuration menu
    Copy the full SHA
    1b6471a View commit details
    Browse the repository at this point in the history

Commits on Aug 1, 2018

  1. fix packaging and add ability to python setup.py test to run tests 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Aug 1, 2018
    Configuration menu
    Copy the full SHA
    79e29c9 View commit details
    Browse the repository at this point in the history

Commits on Aug 7, 2018

  1. Update .travis.yml

    @peterk87
    peterk87 authored Aug 7, 2018
    Configuration menu
    Copy the full SHA
    68b5c7e View commit details
    Browse the repository at this point in the history

Commits on Aug 9, 2018

  1. Update cli.py

    @peterk87
    peterk87 authored Aug 9, 2018
    Configuration menu
    Copy the full SHA
    d6d2270 View commit details
    Browse the repository at this point in the history

  2. Update utils.py

    @peterk87
    peterk87 authored Aug 9, 2018
    Configuration menu
    Copy the full SHA
    7017458 View commit details
    Browse the repository at this point in the history

  3. Update cli.py 

    `str.format`/`"%s" % (str)` replaced with f-strings
    @peterk87
    peterk87 authored Aug 9, 2018
    Configuration menu
    Copy the full SHA
    c2fb9cf View commit details
    Browse the repository at this point in the history

  4. Update utils.py

    @peterk87
    peterk87 authored Aug 9, 2018
    Configuration menu
    Copy the full SHA
    f1df3ad View commit details
    Browse the repository at this point in the history

  5. Update utils.py; docs fix, refactoring, renaming 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Aug 9, 2018
    Configuration menu
    Copy the full SHA
    47fa20f View commit details
    Browse the repository at this point in the history

  6. Update utils.py 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Aug 9, 2018
    Configuration menu
    Copy the full SHA
    51dafd0 View commit details
    Browse the repository at this point in the history

  7. Better arg names 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Aug 9, 2018
    Configuration menu
    Copy the full SHA
    9511966 View commit details
    Browse the repository at this point in the history

  8. doc fix; deconstruct complex condition 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Aug 9, 2018
    Configuration menu
    Copy the full SHA
    cc9e671 View commit details
    Browse the repository at this point in the history

  9. flipped condition in is_overall_coverage_low; added unit test 

    Signed-off-by: pkruczkiewicz <[email protected]>
    pkruczkiewicz committed Aug 9, 2018
    Configuration menu
    Copy the full SHA
    98cd34d View commit details
    Browse the repository at this point in the history

Commits on Sep 7, 2018

  1. wip: scheme creation from HC of SNV binary matrix

    pkruczkiewicz committed Sep 7, 2018
    Configuration menu
    Copy the full SHA
    aca1769 View commit details
    Browse the repository at this point in the history

Commits on Dec 4, 2018

  1. fix flat clusters table column order; greatest to least distance thre… 

    …shold
    @peterk87
    peterk87 committed Dec 4, 2018
    Configuration menu
    Copy the full SHA
    ad7ba3c View commit details
    Browse the repository at this point in the history