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@phac-nml

National Microbiology Laboratory

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  1. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 121 33

  2. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 117 26

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 49 11

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 39 4

  6. biohansel biohansel Public

    Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 26 7

Repositories

Showing 10 of 141 repositories
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 15 MIT 2 20 1 Updated Nov 5, 2024
  • neptune Public

    Neptune: Genomic Signature Discovery

    phac-nml/neptune’s past year of commit activity
    Python 18 Apache-2.0 7 2 0 Updated Nov 5, 2024
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 8 Apache-2.0 3 11 5 Updated Nov 5, 2024
  • irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    phac-nml/irida’s past year of commit activity
    Java 40 Apache-2.0 31 166 15 Updated Nov 5, 2024
  • phac-nml/gasclustering’s past year of commit activity
    Nextflow 0 MIT 0 2 0 Updated Nov 5, 2024
  • arboratornf Public

    EPS suite Arborator pipeline

    phac-nml/arboratornf’s past year of commit activity
    Nextflow 0 MIT 0 3 0 Updated Nov 5, 2024
  • irida-galaxy-importer Public

    A tool for importing data from IRIDA into Galaxy

    phac-nml/irida-galaxy-importer’s past year of commit activity
    Python 7 Apache-2.0 3 3 1 Updated Nov 4, 2024
  • covtrim Public

    CovTrim is a specialized bioinformatics tool designed for precise coverage-based downsampling of FASTQ files from amplicon sequencing data.

    phac-nml/covtrim’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 1, 2024
  • gasnomenclature Public

    Nomenclature assignment pipeline

    phac-nml/gasnomenclature’s past year of commit activity
    Nextflow 0 MIT 0 0 1 Updated Nov 1, 2024
  • fetchdatairidanext Public

    Pipeline for downloading data from INSDC databases for IRIDA Next.

    phac-nml/fetchdatairidanext’s past year of commit activity
    Nextflow 0 MIT 1 2 0 Updated Oct 29, 2024

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