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Graphtyper flag may need to be added if working with Nanopore data otherwise empty merged vcf file Fix linting from a comment #73: Issue comment #70 (comment) created by zachary-foster
May 2, 2024 22:31 2s
May 2, 2024 22:31 2s
Error rendering final report Fix linting from a comment #72: Issue comment #66 (comment) created by logankblair
May 1, 2024 20:19 3s
May 1, 2024 20:19 3s
Error rendering final report Fix linting from a comment #71: Issue comment #66 (comment) created by masudermann
May 1, 2024 19:51 2s
May 1, 2024 19:51 2s
pathogensurveillance.nf error before picard step Fix linting from a comment #70: Issue comment #67 (comment) created by logankblair
April 30, 2024 23:26 3s
April 30, 2024 23:26 3s
PATHOGENSURVEILLANCE:RECORD_MESSAGES process not finished but pipeline says it completed successfully Fix linting from a comment #69: Issue comment #59 (comment) created by masudermann
April 30, 2024 22:35 2s
April 30, 2024 22:35 2s
Error rendering final report Fix linting from a comment #68: Issue comment #66 (comment) created by masudermann
April 30, 2024 22:33 3s
April 30, 2024 22:33 3s
Error rendering final report Fix linting from a comment #67: Issue comment #66 (comment) created by logankblair
April 30, 2024 18:38 3s
April 30, 2024 18:38 3s
Error rendering final report Fix linting from a comment #66: Issue comment #66 (comment) created by zachary-foster
April 30, 2024 18:30 2s
April 30, 2024 18:30 2s
pathogensurveillance.nf error before picard step Fix linting from a comment #65: Issue comment #67 (comment) created by logankblair
April 30, 2024 18:12 2s
April 30, 2024 18:12 2s
pathogensurveillance.nf error before picard step Fix linting from a comment #64: Issue comment #67 (comment) created by logankblair
April 30, 2024 18:10 2s
April 30, 2024 18:10 2s
Error rendering final report Fix linting from a comment #63: Issue comment #66 (comment) created by logankblair
April 30, 2024 18:08 2s
April 30, 2024 18:08 2s
Error rendering final report Fix linting from a comment #62: Issue comment #66 (comment) created by zachary-foster
April 30, 2024 18:03 2s
April 30, 2024 18:03 2s
pathogensurveillance.nf error before picard step Fix linting from a comment #61: Issue comment #67 (comment) created by zachary-foster
April 30, 2024 17:58 2s
April 30, 2024 17:58 2s
Add option to delete or not publish intermendiate files Fix linting from a comment #60: Issue comment #63 (comment) created by logankblair
April 25, 2024 23:09 2s
April 25, 2024 23:09 2s
Add option to split samples within a group into multiple core gene phylogenies if diverse enough Fix linting from a comment #59: Issue comment #10 (comment) created by zachary-foster
April 22, 2024 23:14 3s
April 22, 2024 23:14 3s
Error in dump software versions Fix linting from a comment #58: Issue comment #14 (comment) created by zachary-foster
April 22, 2024 23:06 2s
April 22, 2024 23:06 2s
Missing sample name error Fix linting from a comment #57: Issue comment #15 (comment) created by zachary-foster
April 22, 2024 23:06 2s
April 22, 2024 23:06 2s
Missing fastq1 error Fix linting from a comment #56: Issue comment #16 (comment) created by zachary-foster
April 22, 2024 23:06 2s
April 22, 2024 23:06 2s
Missing fastq2 error Fix linting from a comment #55: Issue comment #17 (comment) created by zachary-foster
April 22, 2024 23:05 2s
April 22, 2024 23:05 2s
Check what happens when either the reference or reference_id columns are empty Fix linting from a comment #54: Issue comment #22 (comment) created by zachary-foster
April 22, 2024 23:04 2s
April 22, 2024 23:04 2s
Including number of genes and SNPs used to build trees Fix linting from a comment #53: Issue comment #50 (comment) created by zachary-foster
April 22, 2024 23:01 2s
April 22, 2024 23:01 2s
Add way for users to specify API keys for NCBI Fix linting from a comment #52: Issue comment #41 (comment) created by zachary-foster
April 22, 2024 22:55 2s
April 22, 2024 22:55 2s
Add a check to the input to ensure only one type of sequence data is present for each sample Fix linting from a comment #51: Issue comment #54 (comment) created by zachary-foster
April 22, 2024 22:41 2s
April 22, 2024 22:41 2s
Check if we need to add quality filtering of flye assemblies of nanopore/pacbio Fix linting from a comment #50: Issue comment #56 (comment) created by zachary-foster
April 22, 2024 22:40 2s
April 22, 2024 22:40 2s
Make input CSV column names and some value case insensitive and spaces = underscores Fix linting from a comment #49: Issue comment #62 (comment) created by zachary-foster
April 22, 2024 22:37 2s
April 22, 2024 22:37 2s