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Important! Template update for nf-core/tools v3.0.1 Fix linting from a comment #102: Issue comment #96 (comment) created by nf-core-bot
October 11, 2024 13:14 2s
October 11, 2024 13:14 2s
Important! Template update for nf-core/tools v3.0.0 Fix linting from a comment #101: Issue comment #95 (comment) created by nf-core-bot
October 9, 2024 11:44 2s
October 9, 2024 11:44 2s
Important! Template update for nf-core/tools v2.14.1 Fix linting from a comment #100: Issue comment #72 (comment) created by nf-core-bot
October 8, 2024 13:13 3s
October 8, 2024 13:13 3s
Bakta database bug ("amrfinder error") Fix linting from a comment #99: Issue comment #90 (comment) created by zachary-foster
August 14, 2024 00:45 2s
August 14, 2024 00:45 2s
Error rendering report when I don't have core gene phylogeny (eukaryote dataset) Fix linting from a comment #98: Issue comment #89 (comment) created by masudermann
August 6, 2024 18:50 2s
August 6, 2024 18:50 2s
Error rendering report when I don't have core gene phylogeny (eukaryote dataset) Fix linting from a comment #97: Issue comment #89 (comment) created by zachary-foster
August 6, 2024 18:40 2s
August 6, 2024 18:40 2s
Fail to create conda environment for sourmash_sketch Fix linting from a comment #96: Issue comment #87 (comment) created by zachary-foster
July 25, 2024 19:00 2s
July 25, 2024 19:00 2s
Fix linting from a comment Fix linting from a comment #95: created by zachary-foster
July 25, 2024 18:57 2s
July 25, 2024 18:57 2s
Looking for sample sheet metadata not in the provided path Fix linting from a comment #94: Issue comment #86 (comment) created by zachary-foster
July 24, 2024 17:50 2s
July 24, 2024 17:50 2s
BUSCO graphs for assembled genomes Fix linting from a comment #93: Issue comment #77 (comment) created by logankblair
July 18, 2024 21:54 2s
July 18, 2024 21:54 2s
Use web history for large NCBI queries to enable downloading of >300 samples Fix linting from a comment #92: Issue comment #84 (comment) created by zachary-foster
July 17, 2024 18:37 2s
July 17, 2024 18:37 2s
Sample sheet error Fix linting from a comment #91: Issue comment #83 (comment) created by zachary-foster
July 16, 2024 17:58 2s
July 16, 2024 17:58 2s
CUSTOM_DUMPSOFTWAREVERSIONS stops -resume from working Fix linting from a comment #90: Issue comment #2 (comment) created by zachary-foster
July 2, 2024 16:35 1s
July 2, 2024 16:35 1s
GENOME_ASSEMBLY waits on ASSIGN_REFERENCES because of QUAST Fix linting from a comment #89: Issue comment #7 (comment) created by zachary-foster
July 2, 2024 16:35 2s
July 2, 2024 16:35 2s
Break up long reads into 150mers to enable long read data for variant calling Fix linting from a comment #88: Issue comment #40 (comment) created by zachary-foster
July 2, 2024 16:33 2s
July 2, 2024 16:33 2s
ASSIGN_REFERENCES:SOURMASH_COMPARE error when inputting newly formatted test metadata file Fix linting from a comment #87: Issue comment #46 (comment) created by zachary-foster
July 2, 2024 16:32 2s
July 2, 2024 16:32 2s
Add code to check what type of sequencing is downloaded from the SRA (Illumina, nanopore, pacbio, etc) Fix linting from a comment #86: Issue comment #53 (comment) created by zachary-foster
July 2, 2024 16:31 1s
July 2, 2024 16:31 1s
read2tree formater ready Fix linting from a comment #85: Issue comment #57 (comment) created by zachary-foster
July 2, 2024 16:31 2s
July 2, 2024 16:31 2s
Add option to delete or not publish intermendiate files Fix linting from a comment #84: Issue comment #63 (comment) created by zachary-foster
July 2, 2024 16:30 2s
July 2, 2024 16:30 2s
If I want to include a long read accession from NCBI, is there a way to detect that reads are long and not short? Fix linting from a comment #83: Issue comment #68 (comment) created by zachary-foster
July 2, 2024 16:29 2s
July 2, 2024 16:29 2s
Allow users to define custom references for phylogenies Fix linting from a comment #82: Issue comment #73 (comment) created by zachary-foster
July 2, 2024 16:27 3s
July 2, 2024 16:27 3s
We need to review the step where we convert Graphtyper VCF outputs files to tabular format using vcf-to-tab Fix linting from a comment #81: Issue comment #76 (comment) created by cahuparo
May 31, 2024 20:19 3s
May 31, 2024 20:19 3s
When only SRA accessions are provided in metadata input file, what happens if both SE and PE fastq reads are downloaded for particular accession? Fix linting from a comment #80: Issue comment #65 (comment) created by zachary-foster
May 28, 2024 19:14 2s
May 28, 2024 19:14 2s
Important! Template update for nf-core/tools v2.14.0 Fix linting from a comment #79: Issue comment #71 (comment) created by nf-core-bot
May 9, 2024 12:21 2s
May 9, 2024 12:21 2s
Add option to split samples within a group into multiple core gene phylogenies if diverse enough Fix linting from a comment #78: Issue comment #10 (comment) created by zachary-foster
May 8, 2024 18:33 2s
May 8, 2024 18:33 2s