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Missing fastq1 error #16

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marinawitherell opened this issue Sep 8, 2023 · 1 comment
Closed

Missing fastq1 error #16

marinawitherell opened this issue Sep 8, 2023 · 1 comment

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@marinawitherell
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Deleted fastq1 (second column) of the first sample and got the error message:

ERROR ~ Error executing process > 'NFCORE_PATHOGENSURVEILLANCE:PATHOGENSURVEILLANCE:INPUT_CHECK:SAMPLESHEET_CHECK (metadata_medium.csv)'

Pipeline would benefit from a more descriptive error message. Also note that this is different than having a file path that doesn't exist (including if special characters are in it). That error does have a descriptive error message.
@zachary-foster
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This should be fixed now

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@zachary-foster @marinawitherell