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Looking for sample sheet metadata not in the provided path Fix linting from a comment #94: Issue comment #86 (comment) created by zachary-foster
July 24, 2024 17:50 2s
July 24, 2024 17:50 2s
BUSCO graphs for assembled genomes Fix linting from a comment #93: Issue comment #77 (comment) created by logankblair
July 18, 2024 21:54 2s
July 18, 2024 21:54 2s
Use web history for large NCBI queries to enable downloading of >300 samples Fix linting from a comment #92: Issue comment #84 (comment) created by zachary-foster
July 17, 2024 18:37 2s
July 17, 2024 18:37 2s
Sample sheet error Fix linting from a comment #91: Issue comment #83 (comment) created by zachary-foster
July 16, 2024 17:58 2s
July 16, 2024 17:58 2s
CUSTOM_DUMPSOFTWAREVERSIONS stops -resume from working Fix linting from a comment #90: Issue comment #2 (comment) created by zachary-foster
July 2, 2024 16:35 1s
July 2, 2024 16:35 1s
GENOME_ASSEMBLY waits on ASSIGN_REFERENCES because of QUAST Fix linting from a comment #89: Issue comment #7 (comment) created by zachary-foster
July 2, 2024 16:35 2s
July 2, 2024 16:35 2s
Break up long reads into 150mers to enable long read data for variant calling Fix linting from a comment #88: Issue comment #40 (comment) created by zachary-foster
July 2, 2024 16:33 2s
July 2, 2024 16:33 2s
ASSIGN_REFERENCES:SOURMASH_COMPARE error when inputting newly formatted test metadata file Fix linting from a comment #87: Issue comment #46 (comment) created by zachary-foster
July 2, 2024 16:32 2s
July 2, 2024 16:32 2s
Add code to check what type of sequencing is downloaded from the SRA (Illumina, nanopore, pacbio, etc) Fix linting from a comment #86: Issue comment #53 (comment) created by zachary-foster
July 2, 2024 16:31 1s
July 2, 2024 16:31 1s
read2tree formater ready Fix linting from a comment #85: Issue comment #57 (comment) created by zachary-foster
July 2, 2024 16:31 2s
July 2, 2024 16:31 2s
Add option to delete or not publish intermendiate files Fix linting from a comment #84: Issue comment #63 (comment) created by zachary-foster
July 2, 2024 16:30 2s
July 2, 2024 16:30 2s
If I want to include a long read accession from NCBI, is there a way to detect that reads are long and not short? Fix linting from a comment #83: Issue comment #68 (comment) created by zachary-foster
July 2, 2024 16:29 2s
July 2, 2024 16:29 2s
Allow users to define custom references for phylogenies Fix linting from a comment #82: Issue comment #73 (comment) created by zachary-foster
July 2, 2024 16:27 3s
July 2, 2024 16:27 3s
We need to review the step where we convert Graphtyper VCF outputs files to tabular format using vcf-to-tab Fix linting from a comment #81: Issue comment #76 (comment) created by cahuparo
May 31, 2024 20:19 3s
May 31, 2024 20:19 3s
When only SRA accessions are provided in metadata input file, what happens if both SE and PE fastq reads are downloaded for particular accession? Fix linting from a comment #80: Issue comment #65 (comment) created by zachary-foster
May 28, 2024 19:14 2s
May 28, 2024 19:14 2s
Important! Template update for nf-core/tools v2.14.0 Fix linting from a comment #79: Issue comment #71 (comment) created by nf-core-bot
May 9, 2024 12:21 2s
May 9, 2024 12:21 2s
Add option to split samples within a group into multiple core gene phylogenies if diverse enough Fix linting from a comment #78: Issue comment #10 (comment) created by zachary-foster
May 8, 2024 18:33 2s
May 8, 2024 18:33 2s
nf-core linting comment nf-core linting comment #338: completed by mashehu
May 7, 2024 13:52 12s
May 7, 2024 13:52 12s
nf-core linting comment nf-core linting comment #337: in_progress by mashehu
May 7, 2024 13:51 15s
May 7, 2024 13:51 15s
nf-core linting comment nf-core linting comment #336: requested by mashehu
May 7, 2024 13:51 12s
May 7, 2024 13:51 12s
initial template build from nf-core/tools, version 2.6 nf-core linting #112: Commit 9b30e9a pushed by mashehu
May 7, 2024 13:51 1m 6s TEMPLATE
TEMPLATE
May 7, 2024 13:51 1m 6s
Graphtyper flag may need to be added if working with Nanopore data otherwise empty merged vcf file Fix linting from a comment #77: Issue comment #70 (comment) created by zachary-foster
May 3, 2024 20:29 2s
May 3, 2024 20:29 2s
Mixed dataset issue-BBsketch misclassified one sample as a pseudomonad rather than nematode and spades ran out of memory Fix linting from a comment #76: Issue comment #69 (comment) created by masudermann
May 3, 2024 19:57 2s
May 3, 2024 19:57 2s
Graphtyper flag may need to be added if working with Nanopore data otherwise empty merged vcf file Fix linting from a comment #75: Issue comment #70 (comment) created by masudermann
May 3, 2024 19:52 3s
May 3, 2024 19:52 3s
Graphtyper flag may need to be added if working with Nanopore data otherwise empty merged vcf file Fix linting from a comment #74: Issue comment #70 (comment) created by masudermann
May 3, 2024 00:04 3s
May 3, 2024 00:04 3s