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Happens occasionally, but I am not sure what causes it. It might be good to add this code to the download step.
Exception: amrfinder error! error code: 1. Please, try 'amrfinder_update --force_update --database /home/fosterz/data/files/projects/current/pathogensurveillance/path_surveil_data/bakta_db/db-light/amrfinderplus-db' to update AMRFinderPlus's internal database.
The text was updated successfully, but these errors were encountered:
Looks like this is fixed by deleting the saved database and redownloading.
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Happens occasionally, but I am not sure what causes it. It might be good to add this code to the download step.
The text was updated successfully, but these errors were encountered: