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23 Open 132 Closed
23 Open 132 Closed
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Issues list

pipeline-catalog should be fetched dynamically
#383 opened Nov 7, 2024 by alyssadai
Consider emitting warning instead of erroring out when pipeline/version not recognized flag:discuss Flag issue that needs to be discussed before it can be implemented.
#382 opened Nov 7, 2024 by alyssadai
Investigate running tests on installed bagel package phase:research involves researching information on a topic rather than implementing specific feature.
#380 opened Nov 7, 2024 by alyssadai
Error out when pipeline-catalog not found or returns empty index of pipelines
#374 opened Nov 4, 2024 by alyssadai
Use Nipoppy schema to validate proc status TSV for bagel derivatives command
#352 opened Oct 1, 2024 by alyssadai
1
Refactor utility modules and test_utility.py maint:refactor Simplifying or restructuring existing code or documentation. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#350 opened Sep 28, 2024 by alyssadai
5 tasks done
1
@alyssadai
3
Use jsonschema.Validator.validate for JSON validation _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again maint:refactor Simplifying or restructuring existing code or documentation. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#338 opened Aug 16, 2024 by alyssadai
1
Support multiple participant ID columns in tabular data flag:discuss Flag issue that needs to be discussed before it can be implemented. someday Not a priority right now, but we want to keep this around to think or discuss more.
#286 opened Mar 26, 2024 by alyssadai
2
Investigate bids2table as more performant alternative to pybids _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again phase:research involves researching information on a topic rather than implementing specific feature.
#282 opened Mar 18, 2024 by alyssadai
1
Raise warning about columns in TSV that have not been annotated feat:improve Incremental, user facing improvements of an existing feature. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:feature Effort to deliver new features, feature changes & improvements
#240 opened Dec 7, 2023 by alyssadai
1
Shorten tracebacks for errors _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again maint:usability General improvements to product usability that are unrelated to feature prioritization. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#218 opened Sep 26, 2023 by alyssadai
1 task
2
Add progress bar for bagel bids feat:improve Incremental, user facing improvements of an existing feature. someday Not a priority right now, but we want to keep this around to think or discuss more. type:feature Effort to deliver new features, feature changes & improvements
#189 opened Aug 26, 2023 by alyssadai
2
Migrate to Pydantic v2 importance:medium We will address this but will delay for higher priority items. maint:dependency Dependency updates and their version upgrades. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#180 opened Jul 21, 2023 by alyssadai
1 of 2 tasks
@alyssadai
4
Refactor get_session_path() BIDS util to rely only on BIDS Layout _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again good first issue Good issue for a new contributor. importance:low We are not actively pursuing this item, it may be addressed when there is extra capacity. maint:refactor Simplifying or restructuring existing code or documentation. PR welcome Issue that is not an internal priority, but external PRs to address it are welcome. quick fix Minimal planning and/or implementation work required. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#171 opened Jun 19, 2023 by alyssadai
3
Refactor the tests to be clearer and better differentiated between integration and unit flag:discuss Flag issue that needs to be discussed before it can be implemented. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again maint:coverage Test coverage improvements that were not included in feature prioritization maint:refactor Simplifying or restructuring existing code or documentation. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#164 opened Jun 15, 2023 by surchs
1
3
[ENH] Use logging and let the user reduce the verbosity feedback:feature request Request for a new functionality or for an enhancement. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again
#162 opened Jun 15, 2023 by surchs
1 task done
3
[BUG] Data dictionary model allows for a continuous BIDS column to have categorical Neurobagel annotations _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:bug Defects in shipped code and fixes for those defects
#152 opened Jun 10, 2023 by surchs
1 task done
2
autodoc CLI with typer documentation Changes only affect the documentation _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again importance:medium We will address this but will delay for higher priority items. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#145 opened Jun 1, 2023 by Remi-Gau
4
Expand check for unused missing values to all annotated controlled terms feat:add The first minimal viable change that implements a new functionality. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:feature Effort to deliver new features, feature changes & improvements
#117 opened Apr 13, 2023 by alyssadai
2
Create example phenotypic inputs for no-session-layer BIDS case good first issue Good issue for a new contributor. maint:coverage Test coverage improvements that were not included in feature prioritization type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#100 opened Mar 15, 2023 by alyssadai
2 tasks
4
Use informative names for examples used in tests importance:medium We will address this but will delay for higher priority items. maint:refactor Simplifying or restructuring existing code or documentation. PR welcome Issue that is not an internal priority, but external PRs to address it are welcome. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#72 opened Feb 16, 2023 by alyssadai
4 tasks
5
Select either "heuristic" or "transformation" to describe allowed age TermURLs for within- and across-tool consistency importance:low We are not actively pursuing this item, it may be addressed when there is extra capacity. maint:refactor Simplifying or restructuring existing code or documentation. someday Not a priority right now, but we want to keep this around to think or discuss more. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#68 opened Feb 14, 2023 by alyssadai
5
Restrict image modalities to those we support documentation Changes only affect the documentation flag:discuss Flag issue that needs to be discussed before it can be implemented. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again good first issue Good issue for a new contributor. PR welcome Issue that is not an internal priority, but external PRs to address it are welcome.
#3 opened Aug 3, 2022 by surchs
5
ProTip! Exclude everything labeled bug with -label:bug.