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30 Open 258 Closed
30 Open 258 Closed
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Issues list

GSvar germline report: add certain SNPs
#579 opened Sep 16, 2024 by marc-sturm
4 tasks
RE changes
#578 opened Sep 16, 2024 by marc-sturm
9 tasks
@marc-sturm
SV: annotate classifcations of SVs and add filter to keep class 4/5 variants
#574 opened Aug 21, 2024 by marc-sturm
@marc-sturm
LongReads: Add QScore to QC
#573 opened Aug 20, 2024 by leonschuetz
2 of 3 tasks
@leonschuetz
Measure file read speed with S3 bucket mounted as a folder and directly from S3
#570 opened Aug 14, 2024 by ubuntolog
@ubuntolog
2
Replace vcfbreakmulti with ngs-bits VcfBreakMulti
#569 opened Aug 14, 2024 by leonschuetz
3 tasks
@marc-sturm
Error handling for Celery task chains
#537 opened Apr 25, 2024 by ubuntolog
@ubuntolog
update ClinVar API
#528 opened Mar 22, 2024 by marc-sturm
@leonschuetz
1
Upload API for read data
#520 opened Feb 28, 2024 by ubuntolog
Working demo of megSAP on AWS
#519 opened Feb 28, 2024 by ubuntolog
wrap all tools used in megSAP in singularity
#511 opened Feb 1, 2024 by ubuntolog
GSvar: refactoring of gene tab
#508 opened Jan 25, 2024 by marc-sturm
8 tasks
@marc-sturm
GSvar: make column order configurable
#507 opened Jan 25, 2024 by marc-sturm
3 tasks
@marc-sturm
Keep URLs alive, if an instance of GSvar is running with a corresponding sample opened
#494 opened Oct 16, 2023 by ubuntolog
@ubuntolog
Amazon version of GSvarServer
#485 opened Sep 15, 2023 by ubuntolog
7 of 16 tasks
@ubuntolog
Poor performance in VersatileFile.readline enhancement
#480 opened Aug 29, 2023 by ubuntolog
@ubuntolog
convert legacy data to masked GRCh38
#479 opened Aug 29, 2023 by marc-sturm
4 of 10 tasks
@marc-sturm
1
Trimmed base percentage not correct for long read alignments
#468 opened Aug 4, 2023 by jakobmatthes
@leonschuetz
1
non personalized cfDNA Report
#461 opened Jul 21, 2023 by Ott-Alexander
3 tasks
RNA-Report:
#460 opened Jul 21, 2023 by Ott-Alexander
5 tasks
Better IGV integration with GSvar
#458 opened Jul 20, 2023 by ubuntolog
3 of 5 tasks
@ubuntolog
switch to new VICC classification version
#449 opened Jul 4, 2023 by Ott-Alexander
1 of 2 tasks
GSvar: add REs to report config
#421 opened Apr 28, 2023 by marc-sturm
23 of 26 tasks
@marc-sturm @leonschuetz
1
Loading tracks in IGV is very slow while working through Citrix-Server
#383 opened Jan 27, 2023 by ubuntolog
2 tasks
cfDNA: track variants which were excluded from cfDNA panel design in NGSD
#330 opened Oct 10, 2022 by leonschuetz
@leonschuetz
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