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Replace vcfbreakmulti with ngs-bits VcfBreakMulti #569

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leonschuetz opened this issue Aug 14, 2024 · 0 comments
Open
3 tasks

Replace vcfbreakmulti with ngs-bits VcfBreakMulti #569

leonschuetz opened this issue Aug 14, 2024 · 0 comments
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@marc-sturm

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leonschuetz commented Aug 14, 2024 •
edited by marc-sturm
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Vcflib vcfbreakmulti doesn't handle annotations correctly during splitting

  • test and fix VcfBreakMulti
  • create tests
  • integrate into megSAP

See:
tabix /mnt/storage2/projects/diagnostic/Genome_Diagnostik/Sample_DNA2106177A1_02/dragen_variant_calls/DNA2106177A1_02_dragen.vcf.gz chr1:4772080-4772085
@marc-sturm marc-sturm self-assigned this Aug 15, 2024
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@marc-sturm @leonschuetz