Merge pull request #51 from wilhelm-lab/develop

Fix AlphaPept annotation.
wilhelm-lab · Aug 16, 2023 · f746afb · f746afb
2 parents 128c2dc + 7fb337f
commit f746afb
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diff --git a/models/AlphaPept/AlphaPept_Helper_annotation/1/model.py b/models/AlphaPept/AlphaPept_Helper_annotation/1/model.py
diff --git a/models/AlphaPept/AlphaPept_Helper_annotation/config.pbtxt b/models/AlphaPept/AlphaPept_Helper_annotation/config.pbtxt
diff --git a/models/AlphaPept/AlphaPept_Preprocess_ProForma/1/lib.py b/models/AlphaPept/AlphaPept_Preprocess_ProForma/1/lib.py
@@ -3,8 +3,7 @@
 import pandas as pd
 
 MOD_DF = pd.read_csv("/models/AlphaPept/AlphaPept_Preprocess_ProForma/1/mod_df.csv")
-MOD_DF.loc[MOD_DF["mod_name"] == "Oxidation@M", "mod_name"] = "M[UNIMOD:35]"
-MOD_DF.loc[MOD_DF["mod_name"] == "Carbamidomethyl@C", "mod_name"] = "C[UNIMOD:4]"
+
 
 
 MOD_ELEMENTS = [