Merge pull request #50 from wilhelm-lab/fix/alphapept_preprocess_mods

fix unimod name column to conform with proforma
wilhelm-lab · Aug 16, 2023 · 7fb337f · 7fb337f
2 parents f3aa5ee + d5e4026
commit 7fb337f
Show file tree

Hide file tree

Showing 2 changed files with 2,686 additions and 2,687 deletions.
diff --git a/models/AlphaPept/AlphaPept_Preprocess_ProForma/1/lib.py b/models/AlphaPept/AlphaPept_Preprocess_ProForma/1/lib.py
@@ -3,8 +3,7 @@
 import pandas as pd
 
 MOD_DF = pd.read_csv("/models/AlphaPept/AlphaPept_Preprocess_ProForma/1/mod_df.csv")
-MOD_DF.loc[MOD_DF["mod_name"] == "Oxidation@M", "mod_name"] = "M[UNIMOD:35]"
-MOD_DF.loc[MOD_DF["mod_name"] == "Carbamidomethyl@C", "mod_name"] = "C[UNIMOD:4]"
+
 
 
 MOD_ELEMENTS = [