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Added in the iridanext plugin and a iridanext.config to format output JSON for IRIDA-Next compatibility. Included all output files per sample.
- mlst.tsv
- plasmidfinder.tsv
- resfinder.tsv
- results.xlsx
- settings.txt
- summary.tsv
No global or meta information added.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).