Update lint CLI command

phac-nml · Oct 10, 2024 · d1b71a1 · d1b71a1
1 parent a246014
commit d1b71a1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
@@ -51,7 +51,7 @@ jobs:
           GITHUB_COMMENTS_URL: ${{ github.event.pull_request.comments_url }}
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           GITHUB_PR_COMMIT: ${{ github.event.pull_request.head.sha }}
-        run: nf-core -l lint_log.txt lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md
+        run: nf-core -l lint_log.txt pipelines lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md
 
       - name: Save PR number
         if: ${{ always() }}