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    106 repositories

    • pegasus

      Public
      Pegasus Workflow Management System - Automate, recover, and debug scientific computations.
      distributed-systemsbioinformaticshpcworkflow-management-systemworkflow
      Java
      •
      Apache License 2.0
      •74•188•0•0•Updated Nov 7, 2024Nov 7, 2024

    • chess-qmb-workflow

      Public
      A Pegasus workflow to do processing for CHESS Quantum Materials Beamline
      Python
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • buildenv

      Public
      Images used by the Pegasus CI/CD pipelines
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • ACCESS-Pegasus-Examples

      Public
      Pegasus Workflows examples including the Pegasus tutorial, to run on ACCESS resources.
      Jupyter Notebook
      •
      Apache License 2.0
      •1•2•0•0•Updated Sep 18, 2024Sep 18, 2024

    • slurm-docker-cluster

      Public
      A Slurm cluster using docker-compose
      Dockerfile
      •
      MIT License
      •183•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • homebrew-tools

      Public
      Homebrew Formulas for Pegasus
      Ruby
      •2•2•1•0•Updated Aug 16, 2024Aug 16, 2024

    • pegasus-usc-tutorial

      Public
      Pegasus tutorial tailored for the USC CACR Discovery Cluster
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • pegasus-glidein

      Public
      A simple HTCondor glidein for HPC systems
      Shell
      •
      Apache License 2.0
      •0•1•0•0•Updated Aug 12, 2024Aug 12, 2024

    • 1000genome-workflow

      Public
      Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project
      scientific-workflows1000genomespegasus-wms
      Jupyter Notebook
      •
      Apache License 2.0
      •8•11•0•3•Updated Jul 30, 2024Jul 30, 2024

    • eht-pegasus

      Public
      EHT Workflow using Pegasus
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • ACCESS-Pegasus-Jetstream2

      Public
      ACCESS-Pegasus worker VM configuration for Jetstream2
      SaltStack
      •0•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • access-provisioner

      Public
      Provisioner for the ACCESS-Pegasus TestPool
      Python
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • pegasus-sage

      Public
      Pegasus Sage Workflows
      Jupyter Notebook
      •0•1•0•0•Updated May 31, 2024May 31, 2024

    • pypegasus-example

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • compare-large-language-models-workflow

      Public
      Python
      •1•0•0•0•Updated May 16, 2024May 16, 2024

    • cerebras-modelzoo

      Public
      example workflow for running on neocortex, using Cerebras training examples
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • orcasound-workflow

      Public
      Pegasus workflow for the orca github actions workflow
      Python
      •1•1•0•1•Updated Mar 25, 2024Mar 25, 2024

    • lung-instance-segmentation-workflow

      Public
      Instance segmentation with U-Net/Mask R-CNN workflow using Keras & Ray Tune
      machine-learningcnn-kerasray-tune
      Python
      •3•2•0•0•Updated Mar 15, 2024Mar 15, 2024

    • pegasus-metrics

      Public
      Anonymous usage metrics collection and reporting for Pegasus
      Python
      •
      Apache License 2.0
      •1•1•0•2•Updated Feb 6, 2024Feb 6, 2024

    • predict-future-sales-workflow

      Public
      Python
      •0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • casa-containers

      Public
      Dockerfile
      •0•1•0•0•Updated Dec 12, 2023Dec 12, 2023

    • casa-nowcast-workflow

      Public
      Perl
      •1•0•0•0•Updated Dec 8, 2023Dec 8, 2023

    • chap-edd-workflow

      Public
      Sample Pegasus workflow for running an EDD workflow as part of the CHESS Analysis Pipelines (CHAP)
      Python
      •0•0•0•0•Updated Dec 4, 2023Dec 4, 2023

    • SOMOSPIE

      Public
      Soil Moisture Workflow
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •7•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • alphafold-pegasus

      Public
      Pegasus implementation of AlphaFold
      Jupyter Notebook
      •1•0•0•0•Updated Nov 5, 2023Nov 5, 2023

    • freesurfer-osg-workflow

      Public
      A Pegasus workflow for running FreeSurfer on the Open Science Grid
      brain-imagingfreesurfer
      Python
      •3•2•7•0•Updated Sep 13, 2023Sep 13, 2023

    • pegasus-annex

      Public
      A Workflow Submit Host with Pegasus + HTCondor that allows you to annex resources into the submit host
      Dockerfile
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • ADASS21-montage-docker-image

      Public
      A Montage workflow, ready to run in the Pegasus tutorial container.
      Jupyter Notebook
      •1•0•0•1•Updated May 17, 2023May 17, 2023

    • mask-detection-workflow

      Public
      Mask Detection and Classification with pre-trained FastRCNN model using PyTorch & Optuna
      machine-learningtransfer-learningpytorch-cnnoptuna
      Jupyter Notebook
      •0•0•0•0•Updated May 11, 2023May 11, 2023

    • rosetta-pegasus

      Public
      This is a Pegasus workflow for running Rosetta's De novo structure prediction on the OSG. The workflow predicts the 3-dimensional structure of a protein starting with an amino acid sequence, using the Abinitio Relax algorithm.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 1, 2023May 1, 2023