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    15 repositories

    • gnomad-singapore

      Public
      gnomAD-Singapore is the national node based a Singapore of the Federated gnomAD network
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • SG10K-SV-MANUSCRIPT

      Public
      THIS REPOSITORY CONTAINS ALL THE SCRIPTS USED FOR THE SG10K-SV MANUSCRIPT
      Jupyter Notebook
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • NPM-sample-qc

      Public
      reference implementation of GA4GH WGS Quality Control Standards
      mupad
      •
      MIT License
      •2•9•0•0•Updated Sep 25, 2024Sep 25, 2024

    • SG10K-lcWGS

      Public
      lcWGS PRS imputation joint GRIDS-NPM x Nalagenetics project
      Nextflow
      •0•0•0•1•Updated Apr 10, 2024Apr 10, 2024

    • SG10K-CYP2D6

      Public
      Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort
      Jupyter Notebook
      •0•3•0•1•Updated Mar 26, 2024Mar 26, 2024

    • Hail-on-AWS

      Public
      Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.
      Shell
      •
      Apache License 2.0
      •0•1•0•2•Updated Oct 25, 2023Oct 25, 2023

    • lambda-chorus-vcf

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated May 12, 2023May 12, 2023

    • wgs-sample-qc

      Public
      visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results
      Python
      •5•2•1•0•Updated Feb 16, 2023Feb 16, 2023

    • sg10k-health

      Public
      the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) was a "proof-of-concept" phase demonstrating the feasibility of large-scale genomic data generation with linkage to electronic health data. A headline…
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Sep 2, 2022Sep 2, 2022

    • aws-genomics-datalake

      Public
      Fork from aws-samples repo: code referenced in the AWS blog post "Build a Genomics data lake on AWS".
      Jupyter Notebook
      •
      MIT No Attribution
      •3•0•0•0•Updated Sep 20, 2021Sep 20, 2021

    • demo-notebooks

      Public
      Collection of Zeppelin notebook to serve as demo for Hail usage
      MIT License
      •0•0•0•0•Updated Jun 14, 2021Jun 14, 2021

    • service-workbench-on-aws

      Public
      A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
      JavaScript
      •
      Apache License 2.0
      •119•0•0•0•Updated Jun 11, 2021Jun 11, 2021

    • Beacon-on-GraphQL

      Public
      This implementation of the Beacon protocol leverages on graphQL to query an ElasticSearch database in which genomic data collections are stored
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Dec 11, 2020Dec 11, 2020

    • gnomad-browser

      Public
      JavaScript tools for exploring genomic data
      JavaScript
      •
      MIT License
      •43•0•0•0•Updated Dec 3, 2020Dec 3, 2020

    • MultiQC_NPM

      Public
      A MultiQC plugin for downstream analysis of NPM data
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 21, 2020Apr 21, 2020