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c-BIG

Centre for Big Data and Integrative Genomics (c-BIG) is an A*STAR multi-institutional effort to enable big data analytics and integrative genomics in Singapore

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  1. NPM-sample-qc NPM-sample-qc Public

    reference implementation of GA4GH WGS Quality Control Standards

    mupad 9 2

  2. SG10K-CYP2D6 SG10K-CYP2D6 Public

    Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort

    Jupyter Notebook 3

  3. wgs-sample-qc wgs-sample-qc Public

    visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results

    Python 2 5

  4. sg10k-health sg10k-health Public

    the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) …

    Jupyter Notebook 2 1

  5. Hail-on-AWS Hail-on-AWS Public

    Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

    Shell 1

  6. MultiQC_NPM MultiQC_NPM Public

    A MultiQC plugin for downstream analysis of NPM data

    Python

Repositories

Showing 10 of 15 repositories
  • gnomad-singapore Public

    gnomAD-Singapore is the national node based a Singapore of the Federated gnomAD network

    c-BIG/gnomad-singapore’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 22, 2024
  • SG10K-SV-MANUSCRIPT Public

    THIS REPOSITORY CONTAINS ALL THE SCRIPTS USED FOR THE SG10K-SV MANUSCRIPT

    c-BIG/SG10K-SV-MANUSCRIPT’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 1, 2024
  • NPM-sample-qc Public

    reference implementation of GA4GH WGS Quality Control Standards

    c-BIG/NPM-sample-qc’s past year of commit activity
    mupad 9 MIT 2 0 0 Updated Sep 25, 2024
  • SG10K-lcWGS Public

    lcWGS PRS imputation joint GRIDS-NPM x Nalagenetics project

    c-BIG/SG10K-lcWGS’s past year of commit activity
    Nextflow 0 0 0 1 Updated Apr 10, 2024
  • SG10K-CYP2D6 Public

    Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort

    c-BIG/SG10K-CYP2D6’s past year of commit activity
    Jupyter Notebook 3 0 0 1 Updated Mar 26, 2024
  • Hail-on-AWS Public

    Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

    c-BIG/Hail-on-AWS’s past year of commit activity
    Shell 1 Apache-2.0 0 0 2 Updated Oct 25, 2023
  • lambda-chorus-vcf Public
    c-BIG/lambda-chorus-vcf’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated May 12, 2023
  • wgs-sample-qc Public

    visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results

    c-BIG/wgs-sample-qc’s past year of commit activity
    Python 2 5 1 0 Updated Feb 16, 2023
  • sg10k-health Public

    the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) was a "proof-of-concept" phase demonstrating the feasibility of large-scale genomic data generation with linkage to electronic health data. A headline…

    c-BIG/sg10k-health’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Sep 2, 2022
  • aws-genomics-datalake Public Forked from aws-samples/aws-genomics-datalake

    Fork from aws-samples repo: code referenced in the AWS blog post "Build a Genomics data lake on AWS".

    c-BIG/aws-genomics-datalake’s past year of commit activity
    Jupyter Notebook 0 MIT-0 4 0 0 Updated Sep 20, 2021
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