Outlier detection and robust estimation #48
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| workflow_dispatch: | |
| jobs: | |
| linter-check: | |
| name: Lint code | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| # Full git history is needed to get a proper | |
| # list of changed files within `super-linter` | |
| fetch-depth: 0 | |
| - name: Lint code | |
| uses: github/super-linter/slim@v4 | |
| env: | |
| LINTER_RULES_PATH: . | |
| DEFAULT_BRANCH: master | |
| VALIDATE_ALL_CODEBASE: false | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| FILTER_REGEX_INCLUDE: ./pymultifracs/*.py | |
| VALIDATE_PYTHON_FLAKE8: true | |
| VALIDATE_PYTHON_PYLINT: true | |
| test-suite: | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| runs-on: ${{ matrix.os }} | |
| needs: linter-check | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Get Date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('env.yml') }} | |
| - name: Setup python ${{ matrix.python-version }} with mamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: meta.yml | |
| - name: Testing | |
| run: | | |
| mamba install numpy scipy pywavelets seaborn numba statsmodels pytest pytest-xdist pytest-cov tqdm joblib | |
| pip install -e .[bootstrap,robust] | |
| pytest -n auto -x --cov=./ --cov-report=xml | |
| - name: Upload coverage | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml # optional | |
| name: codecov-umbrella # optional | |
| fail_ci_if_error: false # optional (default = false) | |
| verbose: true # optional (default = false) |