Fixed CI error, conda -> mamba

neurospin · Apr 14, 2024 · 72d2319 · 72d2319
1 parent 9e96f8f
commit 72d2319
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Showing 3 changed files with 8 additions and 15 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -39,7 +39,7 @@ jobs:
       fail-fast: true
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.11"]
+        python-version: ["3.10", "3.11"]
     steps:
       - uses: actions/checkout@v3
       - name: Get Date
@@ -55,16 +55,15 @@ jobs:
           key:
             ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
             hashFiles('env.yml') }}
-      - name: Setup python ${{ matrix.python-version }} with conda
-        uses: conda-incubator/setup-miniconda@v2
+      - name: Setup python ${{ matrix.python-version }} with mamba
+        uses: mamba-org/setup-micromamba@v1
         with:
           auto-update-conda: true
           python-version: ${{ matrix.python-version }}
           environment-file: meta.yml
-          use-only-tar-bz2: true
       - name: Testing
         run: |
-          conda install numpy scipy pywavelets seaborn numba statsmodels pytest pytest-xdist pytest-cov tqdm joblib
+          mamba install numpy scipy pywavelets seaborn numba statsmodels pytest pytest-xdist pytest-cov tqdm joblib
           pip install -e .[bootstrap,robust]
           pytest -n auto -x --cov=./ --cov-report=xml
       - name: Upload coverage
@@ -73,5 +72,5 @@ jobs:
         with:
           files: ./coverage.xml # optional
           name: codecov-umbrella # optional
-          fail_ci_if_error: true # optional (default = false)
+          fail_ci_if_error: false # optional (default = false)
           verbose: true # optional (default = false)
diff --git a/.github/workflows/doc.yml b/.github/workflows/doc.yml
@@ -34,8 +34,8 @@ jobs:
       - name: Build doc
         shell: bash -el {0}
         run: |
-          conda install -c conda-forge pip sphinx numpydoc pydata-sphinx-theme
-          python -m pip install .
+          conda install -c conda-forge pip sphinx numpydoc pydata-sphinx-theme nbsphinx
+          python -m pip install .[doc]
           cd doc
           make html
           touch _build/html/.nojekyll

diff --git a/meta.yml b/meta.yml
@@ -1,15 +1,9 @@
 name: pymultifracs
 channels:
   - conda-forge
-  - defaults
 dependencies:
   - python>=3.8,<3.12.0
   - numpy>=1.22.4
   - scipy>=1.8.1
   - pywavelets>=1.3.0
-  - seaborn>=0.12.0
-  - scikit-learn>=1.1.1
-  - statsmodels
-  - pip
-  - pip:
-    - recombinator
+  - seaborn>=0.12.0