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SUP Modification Basecalling Model Architecture #1121

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harikaurel opened this issue Nov 6, 2024 · 1 comment
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SUP Modification Basecalling Model Architecture #1121

harikaurel opened this issue Nov 6, 2024 · 1 comment
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models Issues related to model selection mods For issues related to modified base calling question Issue is a question

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@harikaurel
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Hi! From what I understand, Remora is integrated with Dorado, and the latest SUP canonical basecalling models now use Transformer-based architectures. I was curious if the SUP models for modification basecalling are also Transformer-based or if they still rely on CNNs and LSTMs?

@malton-ont
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Hi @harikaurel,

The modification models are currently CNN+LSTM.

@malton-ont malton-ont added question Issue is a question mods For issues related to modified base calling models Issues related to model selection labels Nov 7, 2024
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