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@nanoporetech

Oxford Nanopore Technologies

Nanopores for single molecule (DNA/RNA, protein) analysis using the MinION, GridION and PromethION systems

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 488 59

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 154 20

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 407 74

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 126 18

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 176 27

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 389 120

Repositories

Showing 10 of 88 repositories
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 132 7 86 0 Updated Sep 19, 2024
  • remora Public

    Methylation/modified base calling separated from basecalling.

    nanoporetech/remora’s past year of commit activity
    Python 154 20 1 1 Updated Sep 17, 2024
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 488 59 103 (2 issues need help) 2 Updated Sep 16, 2024
  • homebrew-tap Public

    Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

    nanoporetech/homebrew-tap’s past year of commit activity
    Ruby 6 0 0 0 Updated Sep 16, 2024
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 407 74 8 0 Updated Sep 11, 2024
  • pomoxis Public

    Analysis components from Oxford Nanopore Research

    nanoporetech/pomoxis’s past year of commit activity
    Python 93 23 10 1 Updated Sep 4, 2024
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 4 0 1 1 Updated Aug 26, 2024
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 126 18 24 3 Updated Aug 9, 2024
  • minknow_api Public

    Protobuf and gRPC specifications for the MinKNOW API

    nanoporetech/minknow_api’s past year of commit activity
    Python 55 12 27 1 Updated Jul 31, 2024
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    nanoporetech/bonito’s past year of commit activity
    Python 389 120 92 (1 issue needs help) 2 Updated Jul 25, 2024
View all repositories

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