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Feature/results in memory #193

Merged
merged 41 commits into from
Oct 13, 2023
Merged

Feature/results in memory #193

merged 41 commits into from
Oct 13, 2023

Commits on Aug 16, 2023

  1. Working variable count distributions

    @mogres
    mogres committed Aug 16, 2023
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Commits on Sep 8, 2023

  1. * add radius to molecules array 

    * update simularium helper to use radius in molecules
* update max and min radii
* add size options to ingredient initialization
* refactor distribution value extraction
    @mogres
    mogres committed Sep 8, 2023
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  2. Test recipe and config for variable size

    @mogres
    mogres committed Sep 8, 2023
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Commits on Sep 12, 2023

  1. add radius to ingredient array dict

    @mogres
    mogres committed Sep 12, 2023
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Commits on Sep 15, 2023

  1. add test variable size recipe

    @meganrm
    meganrm committed Sep 15, 2023
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  2. create packed objects class

    @meganrm
    meganrm committed Sep 15, 2023
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  3. Merge branch 'feature/variable_size' of https://github.com/mesoscope/… 

    …cellpack into feature/results-in-memory
    @meganrm
    meganrm committed Sep 15, 2023
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  4. removing .molecules

    @meganrm
    meganrm committed Sep 15, 2023
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Commits on Sep 20, 2023

  1. pack variable size ingredient successfully

    @meganrm
    meganrm committed Sep 20, 2023
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  2. Merge branch 'main' of https://github.com/mesoscope/cellpack into fea… 

    …ture/results-in-memory
    @meganrm
    meganrm committed Sep 20, 2023
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  3. pack sphere_tree ingredient

    @meganrm
    meganrm committed Sep 20, 2023
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  4. DRY code

    @meganrm
    meganrm committed Sep 20, 2023
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Commits on Sep 21, 2023

  1. store ingredient in packed object

    @meganrm
    meganrm committed Sep 21, 2023
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  2. change to compartment_id

    @meganrm
    meganrm committed Sep 21, 2023
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  3. cleanup

    @meganrm
    meganrm committed Sep 21, 2023
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  4. add second example

    @meganrm
    meganrm committed Sep 21, 2023
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Commits on Oct 6, 2023

  1. * fixed broken image export 

    * formatting using black
    @mogres
    mogres committed Oct 6, 2023
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Commits on Oct 9, 2023

  1. fix flake8 linting errors

    @mogres
    mogres committed Oct 9, 2023
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  2. Update cellpack/autopack/ingredient/Ingredient.py 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres authored Oct 9, 2023
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  3. Update cellpack/autopack/ingredient/Ingredient.py 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres authored Oct 9, 2023
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  4. Update cellpack/tests/packing-configs/test_variable_count_config.json 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres authored Oct 9, 2023
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  5. Update cellpack/autopack/ingredient/Ingredient.py 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres authored Oct 9, 2023
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  6. Update cellpack/autopack/ingredient/Ingredient.py 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres authored Oct 9, 2023
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  7. Update cellpack/autopack/utils.py 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres authored Oct 9, 2023
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  8. get ingredient directly

    @meganrm
    meganrm committed Oct 9, 2023
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  9. revert change to static method

    @meganrm
    meganrm committed Oct 9, 2023
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  10. Merge branch 'feature/results-in-memory' of https://github.com/mesosc… 

    …ope/cellpack into feature/results-in-memory
    @meganrm
    meganrm committed Oct 9, 2023
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  11. fix test

    @meganrm
    meganrm committed Oct 9, 2023
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Commits on Oct 10, 2023

  1. * use kwargs to overload voxelization function 

    * use object instance instead of class to create voxelization
* formatting
    @mogres
    mogres committed Oct 10, 2023
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  2. fix tests

    @mogres
    mogres committed Oct 10, 2023
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  3. removed afvi from get_partners which was erroring out

    @mogres
    mogres committed Oct 10, 2023
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Commits on Oct 11, 2023

  1. remove afvi argument causing partner packing to break

    @mogres
    mogres committed Oct 11, 2023
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  2. add get methods for packed objects

    @meganrm
    meganrm committed Oct 11, 2023
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  3. Merge branch 'feature/results-in-memory' of https://github.com/mesosc… 

    …ope/cellpack into feature/results-in-memory
    @meganrm
    meganrm committed Oct 11, 2023
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  4. move when we store compartments in packed_objects 

    Co-authored-by: Saurabh Mogre <[email protected]>
    @meganrm @mogres
    meganrm and mogres committed Oct 11, 2023
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  5. change radius

    @meganrm
    meganrm committed Oct 11, 2023
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  6. use ingredient stored for compartment

    @meganrm
    meganrm committed Oct 11, 2023
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Commits on Oct 12, 2023

  1. fix linting

    @mogres
    mogres committed Oct 12, 2023
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  2. pack sphere trees successfully and plot in 2D

    @meganrm
    meganrm committed Oct 12, 2023
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  3. Merge branch 'feature/results-in-memory' of https://github.com/mesosc… 

    …ope/cellpack into feature/results-in-memory
    @meganrm
    meganrm committed Oct 12, 2023
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  4. format fixed

    @meganrm
    meganrm committed Oct 12, 2023
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