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Issues list

Inconsistent default value for sga assemble -l
#169 opened May 18, 2023 by Griffan
sga-preqc-report.py Unable to parse the pattern
#167 opened Nov 6, 2021 by Sven-Winter
running problems with graph-diff
#165 opened Nov 21, 2020 by MingjingKang
installation problem with google-sparsehash
#164 opened Jul 29, 2020 by AndreaQ7
5
OverlapProcess.h Missing
#163 opened Jul 7, 2020 by cgroza
index for large .fastq file
#161 opened Jan 17, 2020 by sunsac
Inconsistent format representation for assembly graph edges
#160 opened Dec 2, 2019 by anuradhawick
1
Python 2 is end of life on 2020-01-01
#158 opened Aug 6, 2019 by mr-c
1
How to query occurrences of a sequence in sai and rsai ?
#157 opened Jun 18, 2019 by kounkou
configure forces -std=c++98 but that should be moved to relevant Makefiles or sga code adjusted
#156 opened Apr 4, 2019 by mmokrejs
6
sga-astat module not found
#153 opened Mar 14, 2019 by pnatsi
preqc 'variant branches in k-de Bruijn graph' no y-axis title
#138 opened Jun 15, 2017 by nottwy
CFFLAGS & CXXFAGS
#137 opened Jun 14, 2017 by nottwy
Error: Duplicate read ID - sga-bam2de.pl
#136 opened Apr 6, 2017 by a-lud
2
sga scaffolding and mate-pair orientation
#135 opened Mar 7, 2017 by edu3716
sga rmdup vs sga filter --no-kmer-check.
#134 opened Jan 21, 2017 by yeban
GCC-6: WARNING unordered_map: present but cannot be compiled
#133 opened Jan 11, 2017 by ppericard
1
sga index segfault with large values of -d
#131 opened Nov 3, 2016 by sjackman
11
configure issues
#130 opened Nov 3, 2016 by irenatfh
8
fastq files produced by 'sga correct' not always match the length of the reads
#129 opened Sep 26, 2016 by mictadlo
scaffold2fasta: Assertion `expectedOverlap < (int)contigString.length()' failed
#125 opened Jul 30, 2016 by sjackman
18
DistanceEst --mean
#124 opened Jul 29, 2016 by sjackman
sga-align: prepareReads: Cannot parse record
#121 opened Jul 25, 2016 by sjackman
5
cannot configure with bamtools
#117 opened May 22, 2016 by ArielPaulson
6
Missing scripts in bin directory
#116 opened May 19, 2016 by jsmedmar
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