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Dev branch #31

Merged
merged 29 commits into from
Jun 20, 2024
Merged

Dev branch #31

merged 29 commits into from
Jun 20, 2024

Commits on Jun 3, 2024

  1. debug tests

    @cchu70
    cchu70 committed Jun 3, 2024
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  2. conda yaml file

    @cchu70
    cchu70 committed Jun 3, 2024
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  3. update conda environment install

    @cchu70
    cchu70 committed Jun 3, 2024
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  4. docker setup

    @cchu70
    cchu70 committed Jun 3, 2024
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  5. add running in docker information

    @cchu70
    cchu70 committed Jun 3, 2024
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  6. update documentation

    @cchu70
    cchu70 committed Jun 3, 2024
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  7. Merge pull request #28 from getzlab/tests 

    Tests - testing github action and uploading docker
    @cchu70
    cchu70 authored Jun 3, 2024
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  8. redeploy docker and update documentation

    @cchu70
    cchu70 committed Jun 3, 2024
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  9. mention colab notebook in readme

    @cchu70
    cchu70 committed Jun 3, 2024
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  10. create a quick version of the intro notebook

    @cchu70
    cchu70 committed Jun 3, 2024
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  11. setuptools version <60 for compatibility with python 3.12

    @cchu70
    cchu70 committed Jun 3, 2024
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  12. downgrade setuptools first before installing numpy

    @cchu70
    cchu70 committed Jun 3, 2024
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Commits on Jun 12, 2024

  1. Update README

    @smv5467
    smv5467 authored Jun 12, 2024
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Commits on Jun 19, 2024

  1. Update setup.py with new cnv_suite version

    @ConorMesser
    ConorMesser authored Jun 19, 2024
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  2. Merge branch 'dev_branch' into README_reorganization

    @cchu70
    cchu70 authored Jun 19, 2024
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  3. Merge pull request #30 from getzlab/README_reorganization 

    Update README
    @cchu70
    cchu70 authored Jun 19, 2024
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  4. github action for pushing to ghcr

    @cchu70
    cchu70 committed Jun 19, 2024
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  5. Update deploy_ghcr_docker.yml typo

    @cchu70
    cchu70 authored Jun 19, 2024
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  6. Update deploy_ghcr_docker.yml lowercase name

    @cchu70
    cchu70 authored Jun 19, 2024
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  7. update docker address and include prereqs and outcomes in tutorial no… 

    …tebooks
    @cchu70
    cchu70 committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. Update README.md fix typo

    @cchu70
    cchu70 authored Jun 20, 2024
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  2. Merge branch 'master' into dev_branch

    @cchu70
    cchu70 authored Jun 20, 2024
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  3. bump pypi version

    @cchu70
    cchu70 committed Jun 20, 2024
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  4. Merge branch 'dev_branch' of github.com:getzlab/AnnoMate into dev_branch

    @cchu70
    cchu70 committed Jun 20, 2024
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  5. update data_pkl_path to data_path

    @cchu70
    cchu70 committed Jun 20, 2024
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  6. Update Dockerfile

    @cchu70
    cchu70 authored Jun 20, 2024
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  7. Update README.md - Remove gif

    @cchu70
    cchu70 authored Jun 20, 2024
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  8. Update Dockerfile add simulated data repo

    @cchu70
    cchu70 authored Jun 20, 2024
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  9. Update README.md

    @cchu70
    cchu70 authored Jun 20, 2024
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