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Dev branch #31

Merged
merged 29 commits into from
Jun 20, 2024
Merged

Dev branch #31

merged 29 commits into from
Jun 20, 2024

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cchu70
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@cchu70 cchu70 commented Jun 20, 2024 •
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  • Updated CNV suite package requirements
  • Update installation instructions
  • Updated tutorial notebooks
  • Bump version to 1.0.1

cchu70 and others added 29 commits June 3, 2024 11:17
@cchu70
debug tests
a8db4d1
@cchu70
conda yaml file
b6bfd28
@cchu70
update conda environment install
63bca4c
@cchu70
docker setup
05d2fe9
@cchu70
add running in docker information
d1e1e01
@cchu70
update documentation
2856e83
@cchu70
Merge pull request #28 from getzlab/tests
359774b 
Tests - testing github action and uploading docker
@cchu70
redeploy docker and update documentation
8f34481
@cchu70
mention colab notebook in readme
20dd0ed
@cchu70
create a quick version of the intro notebook
155621b
@cchu70
setuptools version <60 for compatibility with python 3.12
3863ece
@cchu70
downgrade setuptools first before installing numpy
c0c5915
@smv5467
Update README
080200f
@ConorMesser
Update setup.py with new cnv_suite version
9203a30
@cchu70
Merge branch 'dev_branch' into README_reorganization
e46842b
@cchu70
Merge pull request #30 from getzlab/README_reorganization
4c84942 
Update README
@cchu70
github action for pushing to ghcr
e19cd1b
@cchu70
Update deploy_ghcr_docker.yml typo
d547e62
@cchu70
Update deploy_ghcr_docker.yml lowercase name
165cc5d
@cchu70
update docker address and include prereqs and outcomes in tutorial no…
1c16d0c 
…tebooks
@cchu70
Update README.md fix typo
b723e73
@cchu70
Merge branch 'master' into dev_branch
13d23dd
@cchu70
bump pypi version
a37250e
@cchu70
Merge branch 'dev_branch' of github.com:getzlab/AnnoMate into dev_branch
a2795b2
@cchu70
update data_pkl_path to data_path
5d878fb
@cchu70
Update Dockerfile
c44a100
@cchu70
Update README.md - Remove gif
ace63c9
@cchu70
Update Dockerfile add simulated data repo
85b1255
@cchu70
Update README.md
13ecdd8
@cchu70 cchu70 merged commit 10b3536 into master Jun 20, 2024
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3 participants
@cchu70 @smv5467 @ConorMesser