Segfault in CI #398
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Run Basic Tests | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up NetCDF4 with HDF5 support | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libnetcdf-dev libhdf5-dev | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest | |
| if ${{ matrix.python-version == '3.12' }}; then pip install --upgrade setuptools; fi | |
| - name: Install package | |
| run: | | |
| python -m pip install .[dev] | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test if data will work (Meta-Test) | |
| run: | | |
| export HDF5_DEBUG=1 | |
| export NETCDF_DEBUG=1 | |
| export PYMORIZE_XARRAY_NETCDF_BACKEND=h5netcdf | |
| pytest -vvv -s --cov tests/meta/*.py | |
| - name: Test with pytest (Unit) | |
| run: | | |
| export PYMORIZE_XARRAY_NETCDF_BACKEND=h5netcdf | |
| pytest -vvv -s --cov tests/unit/*.py | |
| - name: Test with pytest (Integration) | |
| run: | | |
| export PYMORIZE_XARRAY_NETCDF_BACKEND=h5netcdf | |
| pytest -vvv -s --cov tests/integration/*.py | |
| - name: Test with doctest | |
| run: | | |
| PYTHONPATH=src pytest -v --doctest-modules src/ |