CI-test.yaml

# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: Run Basic Tests
on:
  push:
    branches: ["main"]
  pull_request:
    branches: ["main"]
jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4
        with:
          submodules: recursive
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Set up NetCDF4 with HDF5 support
        run: |
          sudo apt-get update
          sudo apt-get install -y libnetcdf-dev libhdf5-dev
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install flake8 pytest
          if ${{ matrix.python-version == '3.12' }}; then pip install --upgrade setuptools; fi
      - name: Install package
        run: |
          python -m pip install .[dev]
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
      - name: Test if data will work (Meta-Test)
        run: |
          export HDF5_DEBUG=1
          export NETCDF_DEBUG=1
          export PYMORIZE_XARRAY_NETCDF_BACKEND=h5netcdf
          pytest -vvv -s --cov tests/meta/*.py
      - name: Test with pytest (Unit)
        run: |
          export PYMORIZE_XARRAY_NETCDF_BACKEND=h5netcdf
          pytest -vvv -s --cov tests/unit/*.py
      - name: Test with pytest (Integration)
        run: |
          export PYMORIZE_XARRAY_NETCDF_BACKEND=h5netcdf
          pytest -vvv -s --cov tests/integration/*.py
      - name: Test with doctest
        run: |
          PYTHONPATH=src pytest -v --doctest-modules src/