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Merge branch 'main' of https://github.com/Finnem/MassChargeCuration i…
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Finnem committed Apr 24, 2022
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Expand Up @@ -45,14 +45,14 @@ A report about the chosen assignments for every metabolite can be generated with
As an example we can look at all metabolites for which no or incomplete information was available with:
```
import pandas as pd
df = balancer.generate_metabolite_report(f"{model.id}_metaoblites")
df = balancer.generate_metabolite_report(f"{model.id}_metabolites")
pd.set_option('display.max_rows', None) # displays entire DF, takes a while
df[df["Inferrence Type"] != "Clean"]
```

Or at those metabolites where the assignment now differs from the original model with:
```
df = balancer.generate_metabolite_report(f"{model.id}_metaoblites")
df = balancer.generate_metabolite_report(f"{model.id}_metabolites")
pd.set_option('display.max_rows', None) # displays entire DF, takes a while
df[df["Similarity"] != "Same"]
```
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