ci: benchmark using codspeed

.github/workflows/benchmark.yml

@@ -0,0 +1,30 @@
+on:
+  push:
+    branches:
+      - master
+    tags:
+      - v*
+  pull_request:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
+  cancel-in-progress: true
+
+name: Benchmark
+jobs:
+  test:
+    name: Test with tox
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v5
+      with:
+        python-version: '3.11'
+        architecture: 'x64'
+    - run: pip install uv
+    - run: uv pip install --system -e .[test]
+    - name: Run benchmarks
+      uses: CodSpeedHQ/action@v2
+      with:
+        token: ${{ secrets.CODSPEED_TOKEN }}
+        run: pytest tests/ --codspeed

.github/workflows/push.yml

@@ -24,8 +24,6 @@ jobs:
         architecture: 'x64'
     - run: pip install tox tox-gh-actions tox-uv
     - run: tox
-#    - run: conda build conda/recipe -c conda-forge --output-folder conda
-#      if: github.ref == 'refs/heads/master'
     - uses: codecov/codecov-action@v4
       with:
         token: ${{ secrets.CODECOV_TOKEN }}

pyproject.toml

@@ -80,7 +80,7 @@ test = [
     'pytest-xvfb',
     "pytest-console-scripts",
     "pytest-mock",
-    "pytest-benchmark",
+    "pytest-codspeed",
 ]
 docs = [
     'sphinx',

tests/test_reacnetgen.py

@@ -124,7 +124,10 @@ def test_benchmark_detect(self, benchmark, reacnetgen_param):
             nlines = detectclass._readNfunc(f)
         with fileinput.input(files=detectclass.inputfilename) as f:
             lines = next(itertools.zip_longest(*[f] * nlines))
-        benchmark(detectclass._readstepfunc, (0, lines))
+
+        @benchmark
+        def bench():
+            detectclass._readstepfunc((0, lines))
 
     def test_benchmark_hmm(self, benchmark, reacnetgen_param):
         """Benchmark _getoriginandhmm."""
@@ -140,7 +143,10 @@ def test_benchmark_hmm(self, benchmark, reacnetgen_param):
             listtobytes(((5, 6, 1),)),
             listtobytes(index),
         ]
-        benchmark(hmmclass._getoriginandhmm, compressed_bytes)
+
+        @benchmark
+        def bench():
+            hmmclass._getoriginandhmm(compressed_bytes)
 
     def test_re(self, reacnetgen_param):
         """Test regular expression of _HTMLResult."""