bifrost_jaccard recovers the list of colors from a graph and calculates the pair-wise jaccard distance between colors based on the number of common k-mers.
bifrost_jaccard prefix/to/bifrost/files colors.txt pairwise_distances.tsv-
Notifications
You must be signed in to change notification settings - Fork 0
cgroza/bifrost_jaccard
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
Compute jaccard similarity matrix between colors in a bifrost compacted colored de Bruijn graph.
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published