ci: Update Python versions we test against.

[sellth]

No description provided.

[Nicolai-vKuegelgen]

Closed via #216

[sellth]

Not solved by #216 . Dependency conflicts caused by pysam bioconda package and snappy-pipeline block Python 3.11/3.12

[sellth]

test_run_seasnap_itransfer_results_smoke_test fails because fake_filesystem vodoo stops working.

[github-actions]

Please format your code with black: make black.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 80.49%. Comparing base (b7fd7f1) to head (4a43396).
Report is 13 commits behind head on main.

❗ Current head 4a43396 differs from pull request most recent head 2bc0aaf

Please upload reports for the commit 2bc0aaf to get more accurate results.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #215      +/-   ##
==========================================
- Coverage   80.51%   80.49%   -0.02%     
==========================================
  Files         102      102              
  Lines        7966     7964       -2     
==========================================
- Hits         6414     6411       -3     
- Misses       1552     1553       +1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[Nicolai-vKuegelgen]

LGTM,

not sure if we want to roll back the pysam thing in the future, maybe make an issue?

[Nicolai-vKuegelgen]

Maybe we should open an issue, so this doesn't get lost?

[sellth]

Currently blocked by:

• ci: Remove versioneer; use release-please for versioning #223
•  new Biomedsheets PyPI release
• ci: Fix release-please version string management altamisa#136
• new Altamisa PyPI release
• Versioneer is outdated sodar-cli#11
• new SODAR-CLI PyPI release

[sellth]

We need a new biomedsheets PyPI release.