BED file output support

This release adds basic BED file output support to both unikseq and unikseq-Bloom

This feature can be used to quickly cross-reference the regions identified by unikseq with any existing annotations/genome features in GFF3/other file format (e.g., like the ones supported by bedtools intersect)

zip/gz (compressed FASTA) file support

Initial support for gz and zip (compressed FASTA) files in unikseq.pl, unikseq-Bloom.pl and writeBloom.pl

fix variable passing

minor bug fix to unikseq.pl

revert name of outgroup to teleost

• test data : revert name of outgroup to teleost

What's Changed

• Update unikseq-Bloom.pl by @lcoombe in #1

New Contributors

• @lcoombe made their first contribution in #1

Full Changelog: v1.3.1...v1.3.2

unikseq code update and initial Bloom filter (scalable) version

Full Changelog: v1.0.0...v1.3.1

• added new mode for conserved (-c) region identification
• added new verbose (-v) and (-t) output options
• added test data
• initial release of unikseq-Bloom, for unique region identification from large, Gbp-size, genome sequences
• improved documentation

unikseq : eDNA protocol version

Initial public release of unikseq;

Version used in the original eDNA protocol and showcased in the corresponding manuscript