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Update README.md
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warrenlr committed Feb 2, 2024
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Expand Up @@ -256,13 +256,17 @@ If the run is successful, the -unique.fa FASTA output should contain 5 sequences
2. Unzip all FASTA files
(gunzip *.fa.gz) on unix

Note: In version 1.3.4 and subsequent, unikseq-Bloom.pl supports .zip and .gz FASTA files directly (i.e., no need to uncompressed before running unikseq-Bloom.pl)
Note: In version 1.3.4 and subsequent, unikseq-Bloom.pl supports .zip and .gz FASTA files directly (i.e., no need to uncompressed before running)


3. Generate Bloom filters from in/outgroup (uncompressed) FASTA files
3. Generate Bloom filters from in/outgroup FASTA files

writeBloom.pl -f shark.fa
writeBloom.pl -f teleost.fa
---or---
writeBloom.pl -f shark.fa.gz
writeBloom.pl -f teleost.fa.gz


These commands will write two output files:
shark.fa_k25_p0.001_rolling.bloom
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