set default strategy to only_canonical

ablab · Apr 9, 2024 · b4ca882 · b4ca882
1 parent 0293d7a
commit b4ca882
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/isoquant.py b/isoquant.py
@@ -604,15 +604,15 @@ def set_model_construction_options(args):
         'reliable':        ModelConstructionStrategy(2, 0.5, 20,  5, 0.05,  1, 0.1,  0.1,  2, 4, 8, 0.05, 0.05, 50,
                                                      True, False, True, True, StrandnessReportingLevel.only_canonical),
         'default_pacbio':  ModelConstructionStrategy(1, 0.5, 10,  2, 0.02,  1, 0.05,  0.05,  1, 2, 2, 0.02, 0.005, 100,
-                                                     False, True, False, True, StrandnessReportingLevel.only_stranded),
+                                                     False, True, False, True, StrandnessReportingLevel.only_canonical),
         'sensitive_pacbio':ModelConstructionStrategy(1, 0.5, 5,   2, 0.005,  1, 0.01,  0.02,  1, 2, 2, 0.005, 0.001, 100,
                                                      False, True, False, False, StrandnessReportingLevel.only_stranded),
         'default_ont':     ModelConstructionStrategy(1, 0.5, 20,  3, 0.02,  1, 0.05,  0.05,  1, 3, 3, 0.02, 0.02, 10,
-                                                     False, False, True, True, StrandnessReportingLevel.only_stranded),
+                                                     False, False, True, True, StrandnessReportingLevel.only_canonical),
         'sensitive_ont':   ModelConstructionStrategy(1, 0.5, 20,  3, 0.005,  1, 0.01,  0.02,  1, 2, 3, 0.005, 0.005, 10,
                                                      False, True, False, False, StrandnessReportingLevel.only_stranded),
         'fl_pacbio':       ModelConstructionStrategy(1, 0.5, 10,  2, 0.02,  1, 0.05,  0.01,  1, 2, 3, 0.02, 0.005, 100,
-                                                     True, True, False, False, StrandnessReportingLevel.only_stranded),
+                                                     True, True, False, False, StrandnessReportingLevel.only_canonical),
         'all':             ModelConstructionStrategy(0, 0.3, 5,   1, 0.002,  1, 0.01, 0.01, 1, 1, 1, 0.002, 0.001, 500,
                                                      False, True, False, False, StrandnessReportingLevel.all),
         'assembly':        ModelConstructionStrategy(0, 0.3, 5,   1, 0.05,  1, 0.01, 0.02,  1, 1, 1, 0.05, 0.01, 50,