-
Notifications
You must be signed in to change notification settings - Fork 13
Issues: ablab/IsoQuant
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
inconsistency between transcript_tpm.tsv and transcript_model_tpm.tsv
#248
opened Sep 30, 2024 by
Mangosteen24
Tweaking minimap2 parameters in Isoquant
question
Further information is requested
#246
opened Sep 27, 2024 by
sanyalab
Issues in KeyError: 'novel'
duplicate
This issue or pull request already exists
#245
opened Sep 25, 2024 by
kerrwelton
Repeating error mesage: [W::hts_idx_load3] The index file is older than the data file:
input data
Issue is caused by input data
question
Further information is requested
#244
opened Sep 23, 2024 by
zli-lilly
Understanding how inconsistent reads are reused for de novo discovery
question
Further information is requested
#243
opened Sep 22, 2024 by
omarelgarwany
Visualize.py with linear output
enhancement
New feature or request
#241
opened Sep 20, 2024 by
ljwharbers
GFF3 cannot be recognized
bug
Something isn't working
enhancement
New feature or request
fixed in release
Issue resolved and the fix is released, waiting for approval
input data
Issue is caused by input data
#240
opened Sep 20, 2024 by
sanyalab
BrokenProcessPool Error when Running IsoQuant with Custom GTF
#238
opened Sep 10, 2024 by
lebronzhong
Single cell data one library with different conditions
question
Further information is requested
#234
opened Sep 4, 2024 by
vasikara17
Ambiguous Novel Transcript Locations and Merging Transcript Models
question
Further information is requested
#233
opened Sep 4, 2024 by
BenneyMRArgue
I was able to run smoothly after setting the parameter 'ulimit -n 1000000', thanks!
duplicate
This issue or pull request already exists
third-party problem
Problem is related to other tools, libraries, system etc
#232
opened Sep 3, 2024 by
lmulroney
How to handling Transcripts without strand information in IsoQuant GTF File
duplicate
This issue or pull request already exists
fixed in release
Issue resolved and the fix is released, waiting for approval
#231
opened Sep 2, 2024 by
bxZhang996
No CDS in the novel genes predicted by Isoquant
question
Further information is requested
#230
opened Aug 29, 2024 by
sqwwww
How to Process or Filter the Merged GTF File After Using Isoquant
question
Further information is requested
#228
opened Aug 27, 2024 by
lebronzhong
How do I specify FLNC reads in IsoQuant
question
Further information is requested
#226
opened Aug 19, 2024 by
sanyalab
Transcript quantification results are inconsistent
question
Further information is requested
#225
opened Aug 14, 2024 by
biochristmas
issuesTraceback (most recent call last): File "/lustre/home/jianghao/mambaforge/envs/isoquant/bin/isoquant.py", line 808, in <module> main(sys.argv[1:])
third-party problem
Problem is related to other tools, libraries, system etc
#221
opened Aug 2, 2024 by
JhinJhinJhin
A Novel transcript without high-confidence reads support
weird results
Something looks odd in the resulting files
#207
opened Jun 27, 2024 by
yuyun-zhang
Under the Reference-base model, TSS and TTS are not accurately annotated.
weird results
Something looks odd in the resulting files
#203
opened Jun 14, 2024 by
zpliu1126
An inaccurate annotation
weird results
Something looks odd in the resulting files
#200
opened Jun 13, 2024 by
zpliu1126
The issue of matching between the expanded GTF and transcript types
#194
opened May 27, 2024 by
biochristmas
Add sample label to read_assignments.tsv/transcript_model_reads.tsv based on --labels?
enhancement
New feature or request
#192
opened May 21, 2024 by
yangao07
gene_id attribute value cannot be found
enhancement
New feature or request
fixed in release
Issue resolved and the fix is released, waiting for approval
input data
Issue is caused by input data
#190
opened May 17, 2024 by
sqwwww
Previous Next
ProTip!
Exclude everything labeled
bug
with -label:bug.