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Improvements to LINDI tests #61

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merged 6 commits into from
May 18, 2024
Merged

Improvements to LINDI tests #61

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8792de2
dandi improvement
CodyCBakerPhD May 18, 2024
b187b29
dandi improvement
CodyCBakerPhD May 18, 2024
53c006c
remove from benchmarks
CodyCBakerPhD May 18, 2024
2e9a5fa
some results
CodyCBakerPhD May 18, 2024
28e870e
limit automatic cartesian product
CodyCBakerPhD May 18, 2024
cc5fb73
debug multiparams
CodyCBakerPhD May 18, 2024
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915 changes: 915 additions & 0 deletions results/info_environment-91bf3abc58d3f9487dc3b25977d808fc1536e53f.json
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319 changes: 319 additions & 0 deletions ...5-18-12-17-56_machine-Ackermann_environment-91bf3abc58d3f9487dc3b25977d808fc1536e53f.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,319 @@
{
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"environment_hash": "91bf3abc58d3f9487dc3b25977d808fc1536e53f",
"machine_hash": "Ackermann",
"results": {
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"time_remote_file_reading.LindiFileReadLocalReferenceFileSystemBenchmark.time_read_lindi_jsonrfs": {
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},
"time_remote_file_reading.NWBFileReadBenchmark.time_read_hdf5_nwbfile_remfile_with_cache": {
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},
"time_remote_file_reading.NWBLindiFileCreateLocalReferenceFileSystemBenchmark.time_create_lindi_referernce_file_system": {
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"time_remote_file_reading.NWBLindiFileCreateLocalReferenceFileSystemBenchmark.time_create_lindi_referernce_file_system_and_read_jsonrfs": {
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]
},
"time_remote_file_reading.NWBZarrFileReadBenchmark.time_read_zarr_nwbfile": {
"(\"'s3://aind-open-data/ecephys_625749_2022-08-03_15-15-06_nwb_2023-05-16_16-34-55/ecephys_625749_2022-08-03_15-15-06_nwb/ecephys_625749_2022-08-03_15-15-06_experiment1_recording1.nwb.zarr/'\",)": [
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"time_remote_file_reading.NWBZarrFileReadBenchmark.time_read_zarr_nwbfile_force_no_consolidated": {
"(\"'s3://aind-open-data/ecephys_625749_2022-08-03_15-15-06_nwb_2023-05-16_16-34-55/ecephys_625749_2022-08-03_15-15-06_nwb/ecephys_625749_2022-08-03_15-15-06_experiment1_recording1.nwb.zarr/'\",)": [
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}
3 changes: 0 additions & 3 deletions src/nwb_benchmarks/benchmarks/network_tracking_remote_file_reading.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,21 +50,18 @@
lindi_remote_rfs_parameter_cases = dict(
EcephysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-IBL-ecephys/sub-IBL-ecephys_ses-3e7ae7c0_desc-18000000-frames-13653-by-384-chunking.lindi.json",
),
),
OphysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-R6_ses-20200206T210000_behavior+ophys/sub-R6_ses-20200206T210000_behavior+ophys.lindi.json",
),
),
IcephysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-1214579789_ses-1214621812_icephys/sub-1214579789_ses-1214621812_icephys.lindi.json",
),
Expand Down
3 changes: 0 additions & 3 deletions src/nwb_benchmarks/benchmarks/network_tracking_remote_slicing.py
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Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,6 @@
lindi_remote_rfs_parameter_cases = dict(
EcephysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-IBL-ecephys/sub-IBL-ecephys_ses-3e7ae7c0_desc-18000000-frames-13653-by-384-chunking.lindi.json",
),
Expand All @@ -46,7 +45,6 @@
),
OphysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-R6_ses-20200206T210000_behavior+ophys/sub-R6_ses-20200206T210000_behavior+ophys.lindi.json",
),
Expand All @@ -55,7 +53,6 @@
),
IcephysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-1214579789_ses-1214621812_icephys/sub-1214579789_ses-1214621812_icephys.lindi.json",
),
Expand Down
3 changes: 0 additions & 3 deletions src/nwb_benchmarks/benchmarks/time_remote_file_reading.py
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Original file line number Diff line number Diff line change
Expand Up @@ -46,21 +46,18 @@
lindi_remote_rfs_parameter_cases = dict(
EcephysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-IBL-ecephys/sub-IBL-ecephys_ses-3e7ae7c0_desc-18000000-frames-13653-by-384-chunking.lindi.json",
),
),
OphysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-R6_ses-20200206T210000_behavior+ophys/sub-R6_ses-20200206T210000_behavior+ophys.lindi.json",
),
),
IcephysTestCase=dict(
s3_url=get_s3_url(
is_staging=True,
dandiset_id="213889",
dandi_path="sub-1214579789_ses-1214621812_icephys/sub-1214579789_ses-1214621812_icephys.lindi.json",
),
Expand Down
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