Make aerosol output frequency variable

parm/config/gefs/config.base

@@ -135,9 +135,8 @@ export DO_OCN="NO"
 export DO_ICE="NO"
 export DO_AERO="NO"
 export DO_EXTRACTVARS="@DO_EXTRACTVARS@" # Option to process and extract a subset of products to save on disk
-export AERO_FCST_RUN="" # When to run aerosol forecast: gdas, gfs, or both
-export AERO_ANL_RUN="" # When to run aerosol analysis: gdas, gfs, or both
-export WAVE_RUN="" # When to include wave suite: gdas, gfs, or both
+export AERO_FCST_RUN="gefs" # When to run aerosol forecast: gdas, gfs, or both
+export WAVE_RUN="gefs" # When to include wave suite: gdas, gfs, or both
 export DOBNDPNT_WAVE="NO" # The GEFS buoys file does not currently have any boundary points
 export DOIBP_WAV="NO" # Option to create point outputs from input boundary points
 export FRAC_GRID=".true."
@@ -203,13 +202,10 @@ case "${APP}" in
 
     if [[ "${APP}" =~ A$ ]]; then
         export DO_AERO="YES"
-        export AERO_ANL_RUN="both"
-        export AERO_FCST_RUN="gdas"
     fi
 
     if [[ "${APP}" =~ ^S2SW ]]; then
         export DO_WAVE="YES"
-        export WAVE_RUN="both"
         export cplwav2atm=".true."
     fi
     ;;
@@ -225,6 +221,7 @@ export FHMAX=9
 export FHOUT=3           # Will be changed to 1 in config.base if (DOHYBVAR set to NO and l4densvar set to false)
 export FHOUT_OCN=3
 export FHOUT_ICE=3
+export FHOUT_AERO=3
 
 # GFS cycle info
 export gfs_cyc=@gfs_cyc@ # 0: no GFS cycle, 1: 00Z only, 2: 00Z and 12Z only, 4: all 4 cycles.

parm/config/gfs/config.base

@@ -176,9 +176,9 @@ export DO_OCN="NO"
 export DO_ICE="NO"
 export DO_AERO="NO"
 export DO_PREP_OBS_AERO="NO"
-export AERO_FCST_RUN="" # When to run aerosol forecast: gdas, gfs, or both
-export AERO_ANL_RUN="" # When to run aerosol analysis: gdas, gfs, or both
-export WAVE_RUN="" # When to include wave suite: gdas, gfs, or both
+export AERO_FCST_RUN="gdas" # When to run aerosol forecast: gdas, gfs, or both
+export AERO_ANL_RUN="both" # When to run aerosol analysis: gdas, gfs, or both
+export WAVE_RUN="both" # When to include wave suite: gdas, gfs, or both
 export DOBNDPNT_WAVE="NO"
 export DOIBP_WAV="NO" # Option to create point outputs from input boundary points
 export FRAC_GRID=".true."
@@ -229,13 +229,10 @@ case "${APP}" in
     ;;
   ATMA)
     export DO_AERO="YES"
-    export AERO_ANL_RUN="both"
-    export AERO_FCST_RUN="gdas"
     ;;
   ATMW)
     export DO_COUPLED="YES"
     export DO_WAVE="YES"
-    export WAVE_RUN="both"
     ;;
   NG-GODAS)
     export DO_ATM="NO"
@@ -249,13 +246,10 @@ case "${APP}" in
 
     if [[ "${APP}" =~ A$ ]]; then
         export DO_AERO="YES"
-        export AERO_ANL_RUN="both"
-        export AERO_FCST_RUN="gdas"
     fi
 
     if [[ "${APP}" =~ ^S2SW ]]; then
         export DO_WAVE="YES"
-        export WAVE_RUN="both"
     fi
     ;;
   *)
@@ -278,6 +272,7 @@ export FHMAX=9
 export FHOUT=3           # Will be changed to 1 in config.base if (DOHYBVAR set to NO and l4densvar set to false)
 export FHOUT_OCN=3
 export FHOUT_ICE=3
+export FHOUT_AERO=3
 
 # Cycle to run EnKF  (set to BOTH for both gfs and gdas)
 export EUPD_CYC="@EUPD_CYC@"

parm/ufs/gocart/AERO_HISTORY.rc

@@ -58,7 +58,7 @@ PC720x361-DC.LM: 72
   inst_du_ss.mode:        'instantaneous',
   inst_du_ss.grid_label:  PC720x361-DC ,
   inst_du_ss.splitField:  1,
-  inst_du_ss.frequency:   120000 ,
+  inst_du_ss.frequency:   @[inst_du_ss_freq] ,
   inst_du_ss.duration:    010000 ,
   inst_du_ss.ref_time:    000000 ,
   inst_du_ss.nbits:       10,
@@ -72,7 +72,7 @@ PC720x361-DC.LM: 72
   tavg_du_ss.mode:        'time-averaged',
   tavg_du_ss.grid_label:  PC720x361-DC ,
   tavg_du_ss.splitField:  1,
-  tavg_du_ss.frequency:   120000 ,
+  tavg_du_ss.frequency:   @[tavg_du_ss_freq] ,
   tavg_du_ss.duration:    010000 ,
   tavg_du_ss.ref_time:    000000 ,
   tavg_du_ss.nbits:       10,
@@ -85,7 +85,7 @@ PC720x361-DC.LM: 72
   inst_ca.template:       '%y4%m2%d2_%h2%n2z.nc4',
   inst_ca.mode:           'instantaneous',
   inst_ca.grid_label:     PC720x361-DC ,
-  inst_ca.frequency:      120000 ,
+  inst_ca.frequency:      @[inst_ca_freq] ,
   inst_ca.duration:       010000 ,
   inst_ca.ref_time:       000000 ,
   inst_ca.nbits:          10,
@@ -100,7 +100,7 @@ PC720x361-DC.LM: 72
   inst_ni.template:       '%y4%m2%d2_%h2%n2z.nc4',
   inst_ni.mode:           'instantaneous',
   inst_ni.grid_label:     PC720x361-DC ,
-  inst_ni.frequency:      120000 ,
+  inst_ni.frequency:      @[inst_ni_freq] ,
   inst_ni.duration:       010000 ,
   inst_ni.ref_time:       000000 ,
   inst_ni.nbits:          10,
@@ -116,7 +116,7 @@ PC720x361-DC.LM: 72
   inst_su.template:       '%y4%m2%d2_%h2%n2z.nc4',
   inst_su.mode:           'instantaneous',
   inst_su.grid_label:     PC720x361-DC ,
-  inst_su.frequency:      120000 ,
+  inst_su.frequency:      @[inst_su_freq] ,
   inst_su.duration:       010000 ,
   inst_su.ref_time:       000000 ,
   inst_su.nbits:          10,
@@ -135,7 +135,7 @@ PC720x361-DC.LM: 72
   inst_du_bin.mode:       'instantaneous'
   inst_du_bin.grid_label: PC720x361-DC ,
   inst_du_bin.splitField: 1,
-  inst_du_bin.frequency:  010000 ,
+  inst_du_bin.frequency:  @[inst_du_bin_freq] ,
   inst_du_bin.duration:   010000 ,
   inst_du_bin.ref_time:   000000 ,
   inst_du_bin.nbits:      10,
@@ -152,7 +152,7 @@ PC720x361-DC.LM: 72
   tavg_du_bin.mode:       'time-averaged'
   tavg_du_bin.grid_label: PC720x361-DC ,
   tavg_du_bin.splitField: 1,
-  tavg_du_bin.frequency:  030000 ,
+  tavg_du_bin.frequency:  @[tavg_du_bin_freq] ,
   tavg_du_bin.duration:   010000 ,
   tavg_du_bin.ref_time:   000000 ,
   tavg_du_bin.nbits:      10,
@@ -169,7 +169,7 @@ PC720x361-DC.LM: 72
   inst_ss_bin.mode:       'instantaneous'
   inst_ss_bin.grid_label: PC720x361-DC ,
   inst_ss_bin.splitField: 1,
-  inst_ss_bin.frequency:  060000 ,
+  inst_ss_bin.frequency:  @[inst_ss_bin_freq] ,
   inst_ss_bin.duration:   010000 ,
   inst_ss_bin.ref_time:   000000 ,
   inst_ss_bin.nbits:      10,
@@ -186,7 +186,7 @@ PC720x361-DC.LM: 72
   inst_ca_bin.mode:       'instantaneous'
   inst_ca_bin.grid_label:  PC720x361-DC ,
   inst_ca_bin.splitField:  1,
-  inst_ca_bin.frequency:   120000 ,
+  inst_ca_bin.frequency:   @[inst_ca_bin_freq] ,
   inst_ca_bin.duration:    010000 ,
   inst_ca_bin.ref_time:    000000 ,
   inst_ca_bin.nbits:      10,
@@ -208,7 +208,7 @@ PC720x361-DC.LM: 72
   inst_ni_bin.mode:       'instantaneous',
   inst_ni_bin.grid_label:  PC720x361-DC ,
   inst_ni_bin.splitField:  1,
-  inst_ni_bin.frequency:   120000 ,
+  inst_ni_bin.frequency:   @[inst_ni_bin_freq] ,
   inst_ni_bin.duration:    010000 ,
   inst_ni_bin.ref_time:    000000 ,
   inst_ni_bin.nbits:      10,
@@ -225,7 +225,7 @@ PC720x361-DC.LM: 72
   inst_su_bin.mode:       'instantaneous',
   inst_su_bin.grid_label:  PC720x361-DC ,
   inst_su_bin.splitField:  1,
-  inst_su_bin.frequency:   120000 ,
+  inst_su_bin.frequency:   @[inst_su_bin_freq] ,
   inst_su_bin.duration:    010000 ,
   inst_su_bin.ref_time:    000000 ,
   inst_su_bin.nbits:      10,
@@ -244,7 +244,7 @@ PC720x361-DC.LM: 72
   inst_2d.template:   '%y4%m2%d2_%h2%n2z.nc4',
   inst_2d.archive:    '%c/Y%y4',
   inst_2d.mode:       'instantaneous'
-  inst_2d.frequency:  030000,
+  inst_2d.frequency:  @[inst_2d_freq],
   inst_2d.duration:   030000,
   inst_2d.ref_time:   000000,
   inst_2d.grid_label: PC720x361-DC
@@ -343,7 +343,7 @@ PC720x361-DC.LM: 72
   inst_3d.template:   '%y4%m2%d2_%h2%n2z.nc4' ,
   inst_3d.archive:    '%c/Y%y4' ,
   inst_3d.mode:       'instantaneous'
-  inst_3d.frequency:  060000,
+  inst_3d.frequency:  @[inst_3d_freq],
   inst_3d.duration:   010000,
   inst_3d.ref_time:   000000,
   inst_3d.grid_label: PC720x361-DC
@@ -381,7 +381,7 @@ PC720x361-DC.LM: 72
   inst_aod.template:   '%y4%m2%d2_%h2%n2z.nc4' ,
   inst_aod.archive:    '%c/Y%y4' ,
   inst_aod.mode:       'instantaneous'
-  inst_aod.frequency:  060000,
+  inst_aod.frequency:  @[inst_aod_freq],
   inst_aod.duration:   010000,
   inst_aod.ref_time:   000000,
   inst_aod.grid_label: PC720x361-DC
@@ -398,7 +398,7 @@ PC720x361-DC.LM: 72
   tavg_2d_rad.template:   '%y4%m2%d2_%h2%n2z.nc4',
   tavg_2d_rad.archive:    '%c/Y%y4',
   tavg_2d_rad.mode:       'time-averaged',
-  tavg_2d_rad.frequency:  120000,
+  tavg_2d_rad.frequency:  @[tavg_2d_rad_freq],
   tavg_2d_rad.duration:   120000,
   tavg_2d_rad.ref_time:   000000,
   tavg_2d_rad.grid_label: PC720x361-DC
@@ -432,7 +432,7 @@ PC720x361-DC.LM: 72
   tavg_3d_rad.template:   '%y4%m2%d2_%h2%n2z.nc4',
   tavg_3d_rad.archive:    '%c/Y%y4',
   tavg_3d_rad.mode:       'time-averaged',
-  tavg_3d_rad.frequency:  120000,
+  tavg_3d_rad.frequency:  @[tavg_3d_rad_freq],
   tavg_3d_rad.duration:   120000,
   tavg_3d_rad.ref_time:   000000,
   tavg_3d_rad.grid_label: PC720x361-DC

ush/forecast_postdet.sh

@@ -682,23 +682,8 @@ GOCART_rc() {
     [[ ${status} -ne 0 ]] && exit "${status}"
   fi
 
-  # copying GOCART configuration files
-  if [[  -n "${AERO_CONFIG_DIR}" ]]; then
-    ${NCP} "${AERO_CONFIG_DIR}"/*.rc "${DATA}"
-    status=$?
-    [[ ${status} -ne 0 ]] && exit "${status}"
-    # attempt to generate ExtData configuration file if not provided
-    if [[ ! -f "${DATA}/AERO_ExtData.rc" ]]; then
-      { \
-        echo "PrimaryExports%%" ; \
-        cat "${AERO_CONFIG_DIR}/ExtData.other" ; \
-        cat "${AERO_CONFIG_DIR}/ExtData.${AERO_EMIS_FIRE:-none}" ; \
-        echo "%%" ; \
-      } > "${DATA}/AERO_ExtData.rc"
-      status=$?
-      if (( status != 0 )); then exit "${status}"; fi
-    fi
-  fi
+  source "${USHgfs}/parsing_namelists_GOCART.sh"
+  GOCART_namelists
 }
 
 GOCART_postdet() {

ush/forecast_predet.sh

@@ -713,6 +713,5 @@ GOCART_predet(){
 
   if [[ ! -d "${COMOUT_CHEM_HISTORY}" ]]; then mkdir -p "${COMOUT_CHEM_HISTORY}"; fi
 
-  GOCART_OUTPUT_FH=$(seq -s ' ' "${FHMIN}" "6" "${FHMAX}")
-  # TODO: AERO_HISTORY.rc has hardwired output frequency to 6 hours
+  GOCART_OUTPUT_FH=$(seq -s ' ' "${FHMIN}" "${FHOUT_AERO}" "${FHMAX}")
 }

ush/parsing_namelists_GOCART.sh

@@ -0,0 +1,52 @@
+#! /usr/bin/env bash
+
+# Disable variable not used warnings
+# shellcheck disable=SC2034
+GOCART_namelists() {
+  # copying GOCART configuration files
+  if [[  -n "${AERO_CONFIG_DIR}" ]]; then
+
+    local base_in
+    local fhout_aero_padded
+    fhout_aero_padded=$(printf "%02d" "${FHOUT_AERO}")
+    # Only instantaneous AOD is output right now
+    local inst_aod_freq="${fhout_aero_padded}0000"
+
+    # Other gocart fields not currently used
+    local inst_du_ss_freq="120000"
+    local tavg_du_ss_freq="120000"
+    local inst_ca_freq="120000"
+    local inst_ni_freq="120000"
+    local inst_su_freq="120000"
+    local inst_du_bin_freq="010000"
+    local tavg_du_bin_freq="030000"
+    local inst_ss_bin_freq="060000"
+    local inst_ca_bin_freq="120000"
+    local inst_ni_bin_freq="120000"
+    local inst_su_bin_freq="120000"
+    local inst_2d_freq="030000"
+    local inst_3d_freq="060000"
+    local tavg_2d_rad_freq="120000"
+    local tavg_3d_rad_freq="120000"
+
+    for template_in in "${AERO_CONFIG_DIR}/"*.rc; do
+      base_in="$(basename "${template_in}")"
+      atparse < "${template_in}" >> "${DATA}/${base_in}"
+      status=$?
+      [[ ${status} -ne 0 ]] && exit "${status}"
+    done
+
+    # attempt to generate ExtData configuration file if not provided
+    if [[ ! -f "${DATA}/AERO_ExtData.rc" ]]; then
+      { \
+        echo "PrimaryExports%%" ; \
+        cat "${AERO_CONFIG_DIR}/ExtData.other" ; \
+        cat "${AERO_CONFIG_DIR}/ExtData.${AERO_EMIS_FIRE:-none}" ; \
+        echo "%%" ; \
+      } > "${DATA}/AERO_ExtData.rc"
+      # shellcheck disable=SC2320
+      status=$?
+      if (( status != 0 )); then exit "${status}"; fi
+    fi
+  fi
+}