Merge pull request nf-core#1330 from FriederikeHanssen/fix_fulltest

Add SnpEff to full sized tests
FriederikeHanssen · Nov 15, 2023 · 38fe279 · 38fe279
2 parents 4f0cc6d + c46c354
commit 38fe279
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -43,6 +43,7 @@ Pårtetjåkko is a mountain in the south of the park.
 - [#1325](https://github.com/nf-core/sarek/pull/1325) - Update bcfannotate tests and related config files
 - [#1328](https://github.com/nf-core/sarek/pull/1328) - Fix links to docs in `nextflow_schema.json` and `docs/output.md`
 - [#1328](https://github.com/nf-core/sarek/pull/1328) - Add missing icons in `nextflow_schema.json`
+- [#1330](https://github.com/nf-core/sarek/pull/1330) - Add SnpEff to full sized tests
 
 ### Removed
 

diff --git a/conf/test_full.config b/conf/test_full.config
@@ -18,7 +18,7 @@ params {
     input = 'https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/csv/HCC1395_WXS_somatic_full_test.csv'
 
     // Other params
-    tools       = 'strelka,mutect2,freebayes,ascat,manta,cnvkit,tiddit,controlfreec,vep,ngscheckmate'
+    tools       = 'ngscheckmate,strelka,mutect2,freebayes,ascat,manta,cnvkit,tiddit,controlfreec,vep,snpeff'
     split_fastq = 20000000
     intervals   = 's3://ngi-igenomes/test-data/sarek/S07604624_Padded_Agilent_SureSelectXT_allexons_V6_UTR.bed'
     wes         = true

diff --git a/conf/test_full_germline.config b/conf/test_full_germline.config
@@ -18,6 +18,6 @@ params {
     input = 'https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/csv/NA12878_WGS_30x_full_test.csv'
 
     // Other params
-    tools       = 'strelka,freebayes,haplotypecaller,deepvariant,manta,tiddit,cnvkit,vep'
+    tools       = 'strelka,freebayes,haplotypecaller,deepvariant,manta,tiddit,cnvkit,vep,snpeff'
     split_fastq = 50000000
 }