Update conf/modules/annotate.config

Co-authored-by: Maxime U Garcia <[email protected]>
FriederikeHanssen · Nov 15, 2023 · 4f0cc6d · 4f0cc6d
1 parent d6e8958
commit 4f0cc6d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules/annotate.config b/conf/modules/annotate.config
@@ -37,7 +37,7 @@ process {
             ext.args   = { [
                 (params.vep_dbnsfp && params.dbnsfp && !params.dbnsfp_consequence)    ? "--plugin dbNSFP,${params.dbnsfp.split("/")[-1]},${params.dbnsfp_fields}"                                              : '',
                 (params.vep_dbnsfp && params.dbnsfp && params.dbnsfp_consequence)     ? "--plugin dbNSFP,'consequence=${params.dbnsfp_consequence}',${params.dbnsfp.split("/")[-1]},${params.dbnsfp_fields}"   : '',
-                (params.vep_loftee)                                                   ? "--plugin LoF,loftee_path://usr/local/share/ensembl-vep-${params.vep_version}" : '',
+                (params.vep_loftee)                                                   ? "--plugin LoF,loftee_path:/usr/local/share/ensembl-vep-${params.vep_version}" : '',
                 (params.vep_spliceai && params.spliceai_snv && params.spliceai_indel) ? "--plugin SpliceAI,snv=${params.spliceai_snv.split("/")[-1]},indel=${params.spliceai_indel.split("/")[-1]}"            : '',
                 (params.vep_spliceregion)                                             ? '--plugin SpliceRegion'                                                                                                : '',
                 (params.vep_out_format)                                               ? "--${params.vep_out_format}"                                                                                           : '--vcf',