chore: fix coverage #150

	name: Python package

	on:
	push:
	branches:
	- 'master'
	- 'devel'
	paths:
	- catflow/**
	- tests/**
	- .github/workflows/ci.yml
	- pyproject.toml
	- poetry.lock
	pull_request:
	paths:
	- catflow/**
	- tests/**
	- .github/workflows/ci.yml
	- pyproject.toml
	- poetry.lock

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ['3.9', '3.10', '3.11', '3.12']
	poetry-version: ["1.6.1"]

	steps:
	- uses: actions/checkout@v2
	- name: Install OS dependencies
	run: \|
	sudo apt-get update -yy
	sudo apt-get install -yy \
	msttcorefonts
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- uses: abatilo/[email protected]
	with:
	poetry-version: ${{ matrix.poetry-version }}
	- name: Install dependencies
	run: poetry install --no-interaction --without docs
	- name: Lint with flake8
	run: \|
	poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Run tests
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	poetry run coverage run --source=./catflow -m pytest -v tests/ --cov=./ --cov-report=xml
	poetry run coverage report
	- name: Upload coverage reports to Codecov
	uses: codecov/[email protected]
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	slug: chenggroup/catflow

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