feat: add consensus peaks subworkflow #195
kelly-sovacooltest.yml
on: pull_request
pytest-changes
6s
docs-changes
6s
nf-test-changes
3s
prettier
7s
confirm-pass
1s
Annotations
15 errors and 11 warnings
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nf-core-lint (subworkflows/consensus_peaks)
Process completed with exit code 1.
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nf-core-lint (custom/normalizepeaks)
Process completed with exit code 1.
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nf-core-lint (custom/combinepeakcounts)
Process completed with exit code 1.
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pytest (subworkflows/consensus_peaks, docker)
Process completed with exit code 1.
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pytest (subworkflows/consensus_peaks, docker)
Process completed with exit code 2.
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pytest (custom/combinepeakcounts, docker)
Process completed with exit code 2.
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pytest (bedtools/merge, docker)
Process completed with exit code 2.
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pytest (bedtools/map, docker)
Process completed with exit code 2.
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pytest (bedtools/sort, docker)
Process completed with exit code 2.
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pytest (bedops/bedmap, docker)
Process completed with exit code 2.
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pytest (custom/consensuspeaks, docker)
Process completed with exit code 2.
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pytest (cat/fastq, docker)
Process completed with exit code 2.
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pytest (cat/cat, docker)
Process completed with exit code 2.
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pytest (custom/normalizepeaks, docker)
Process completed with exit code 2.
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confirm-pass
Process completed with exit code 1.
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pytest (subworkflows/consensus_peaks, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (subworkflows/consensus_peaks, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity
!/home/runner/work/nf-modules/nf-modules/.singularity. No artifacts will be uploaded.
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pytest (custom/combinepeakcounts, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (bedtools/merge, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (bedtools/map, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (bedtools/sort, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (bedops/bedmap, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (custom/consensuspeaks, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (cat/fastq, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (cat/cat, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (custom/normalizepeaks, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Artifacts
Produced during runtime
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logs-docker-
Expired
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3.9 MB |
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