Replaced decorator skipUnlessModule (#53)

zwicker-group · Jan 3, 2024 · 78ab086 · 78ab086
1 parent 1434192
commit 78ab086
Show file tree

Hide file tree

Showing 4 changed files with 12 additions and 11 deletions.
diff --git a/tests/test_droplet_tracks.py b/tests/test_droplet_tracks.py
@@ -3,9 +3,10 @@
 """
 
 import numpy as np
+import pytest
 
 from pde.grids import UnitGrid
-from pde.tools.misc import skipUnlessModule
+from pde.tools.misc import module_available
 
 from droplets.droplet_tracks import DropletTrack, DropletTrackList
 from droplets.droplets import DiffuseDroplet, SphericalDroplet
@@ -41,7 +42,7 @@ def test_droplettrack():
     assert t1 is not t2
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_droplettrack_io(tmp_path):
     """test writing and reading droplet tracks"""
     path = tmp_path / "test_droplettrack_io.hdf5"
@@ -83,7 +84,7 @@ def test_droplettracklist():
     assert len(tl) == 1
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_droplettracklist_io(tmp_path):
     """test writing and reading droplet tracks"""
     path = tmp_path / "test_droplettracklist_io.hdf5"

diff --git a/tests/test_droplets.py b/tests/test_droplets.py
@@ -7,7 +7,7 @@
 from scipy import integrate
 
 from pde.grids import UnitGrid
-from pde.tools.misc import skipUnlessModule
+from pde.tools.misc import module_available
 from pde.tools.numba import jit
 
 from droplets import droplets
@@ -207,7 +207,7 @@ def test_from_data():
         assert d1 is not d2
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_triangulation_2d():
     """test the 2d triangulation of droplets"""
     d1 = droplets.SphericalDroplet([1, 3], 5)
@@ -221,7 +221,7 @@ def test_triangulation_2d():
         assert l == pytest.approx(drop.surface_area, rel=1e-3), drop
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_triangulation_3d():
     """test the 3d triangulation of droplets"""
     d1 = droplets.SphericalDroplet([1, 2, 3], 5)

diff --git a/tests/test_emulsion.py b/tests/test_emulsion.py
@@ -9,7 +9,7 @@
 import pytest
 
 from pde import CartesianGrid, MemoryStorage, ScalarField, UnitGrid
-from pde.tools.misc import skipUnlessModule
+from pde.tools.misc import module_available
 
 from droplets import DiffuseDroplet, Emulsion, SphericalDroplet, droplets, emulsions
 from droplets.emulsions import EmulsionTimeCourse
@@ -163,7 +163,7 @@ def test_emulsion_linked_data():
     np.testing.assert_array_equal(e[1]._data_array, 5)
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_emulsion_io(tmp_path):
     """test writing and reading emulsions"""
     path = tmp_path / "test_emulsion_io.hdf5"
@@ -206,7 +206,7 @@ def test_timecourse():
     assert len(t1) == 0
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_timecourse_io(tmp_path):
     """test writing and reading emulsions time courses"""
     path = tmp_path / "test_timecourse_io.hdf5"

diff --git a/tests/test_trackers.py b/tests/test_trackers.py
@@ -6,13 +6,13 @@
 import pytest
 
 from pde import CahnHilliardPDE, CartesianGrid, DiffusionPDE, ScalarField, UnitGrid
-from pde.tools.misc import skipUnlessModule
+from pde.tools.misc import module_available
 
 from droplets import LengthScaleTracker, SphericalDroplet
 from droplets.emulsions import EmulsionTimeCourse
 
 
-@skipUnlessModule("h5py")
+@pytest.mark.skipif(not module_available("h5py"), reason="requires `h5py` module")
 def test_emulsion_tracker(tmp_path):
     """test using the emulsions tracker"""
     path = tmp_path / "test_emulsion_tracker.hdf5"