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yjunechoe committed Mar 6, 2024
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4 changes: 1 addition & 3 deletions docs/articles/jlmerclusterperm.html

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4 changes: 3 additions & 1 deletion vignettes/jlmerclusterperm.Rmd
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Expand Up @@ -30,7 +30,9 @@ The CPA procedure identifies empirical clusters in a time series data and tests

## Package design

![jlmerclusterperm package function design](https://raw.githubusercontent.com/yjunechoe/jlmerclusterperm/main/man/figures/jlmerclusterperm_fn_design.png)
```{r, echo = FALSE, out.width="100%"}
knitr::include_graphics("https://raw.githubusercontent.com/yjunechoe/jlmerclusterperm/main/man/figures/jlmerclusterperm_fn_design.png")
```

`jlmerclusterperm` provides both a wholesale and a piecemeal approach to conducting a CPA. The main workhorse function in the package is `clusterpermute()`, which is composed of five smaller functions that are called internally in succession. The smaller functions representing the algorithmic steps of a CPA are also exported, to allow more control over the procedure (e.g., for debugging and diagnosing a CPA run).

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